View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14392_high_62 (Length: 249)

Name: NF14392_high_62
Description: NF14392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14392_high_62
NF14392_high_62
[»] chr4 (10 HSPs)
chr4 (16-233)||(48205663-48205880)
chr4 (16-138)||(26984725-26984847)
chr4 (16-138)||(26998798-26998920)
chr4 (16-64)||(3461200-3461248)
chr4 (16-64)||(11652450-11652498)
chr4 (16-64)||(49106587-49106635)
chr4 (16-64)||(49108691-49108739)
chr4 (16-64)||(50077257-50077305)
chr4 (31-140)||(26982466-26982576)
chr4 (89-138)||(34496895-34496944)
[»] chr8 (8 HSPs)
chr8 (16-64)||(40054313-40054361)
chr8 (16-64)||(41841210-41841258)
chr8 (16-64)||(44878984-44879032)
chr8 (16-64)||(44880889-44880937)
chr8 (16-63)||(37679757-37679804)
chr8 (16-64)||(10944457-10944505)
chr8 (16-64)||(37682058-37682106)
chr8 (22-64)||(42872514-42872556)
[»] chr6 (4 HSPs)
chr6 (16-64)||(10791710-10791758)
chr6 (16-64)||(10795948-10795996)
chr6 (16-64)||(30521243-30521291)
chr6 (16-63)||(8875691-8875738)
[»] chr5 (3 HSPs)
chr5 (16-64)||(1716510-1716558)
chr5 (16-64)||(3643641-3643689)
chr5 (16-64)||(7524969-7525017)
[»] chr2 (15 HSPs)
chr2 (16-64)||(2841075-2841123)
chr2 (16-64)||(8973313-8973361)
chr2 (16-64)||(8979323-8979371)
chr2 (16-64)||(9008022-9008070)
chr2 (16-64)||(9023448-9023496)
chr2 (16-64)||(9026787-9026835)
chr2 (16-64)||(30732009-30732057)
chr2 (16-64)||(32918081-32918129)
chr2 (16-64)||(43850050-43850098)
chr2 (16-63)||(19232457-19232504)
chr2 (16-63)||(30733990-30734037)
chr2 (16-64)||(8984694-8984742)
chr2 (16-64)||(9020848-9020896)
chr2 (16-64)||(9032054-9032102)
chr2 (16-58)||(9030405-9030447)
[»] chr1 (19 HSPs)
chr1 (16-64)||(14652526-14652574)
chr1 (16-64)||(14654398-14654446)
chr1 (16-64)||(14662317-14662365)
chr1 (16-64)||(14664189-14664237)
chr1 (16-64)||(14667169-14667217)
chr1 (16-64)||(14669767-14669815)
chr1 (16-64)||(14674482-14674530)
chr1 (16-64)||(14676633-14676681)
chr1 (16-64)||(14679860-14679908)
chr1 (16-64)||(14683751-14683799)
chr1 (16-64)||(14706089-14706137)
chr1 (16-64)||(14708579-14708627)
chr1 (16-64)||(14716292-14716340)
chr1 (16-64)||(28366257-28366305)
chr1 (16-64)||(33988071-33988119)
chr1 (16-64)||(38175588-38175636)
chr1 (16-63)||(14681601-14681648)
chr1 (16-62)||(11872539-11872585)
chr1 (31-59)||(37422175-37422203)
[»] chr3 (1 HSPs)
chr3 (17-63)||(15758562-15758608)


Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 233
Target Start/End: Complemental strand, 48205880 - 48205663
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatgctctaaactgtgaagaaattctaaatttataacaaggctttgcgtgctttt 115  Q
    ||||||||||| || |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48205880 aagaacagatactacacttaatcttagctaaaaggccgagaaaggtatgctctaaactgtgaagaaattctaaatttataacaaggctttgcgtgctttt 48205781  T
Q  116 catacttctgagcgatgtgggacatacaatactcaattagcaatcgaagtatttgtaatattagtctgaacctgagactaacaactgattccaaacacgt 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  48205780 catacttctgagcgatgtgggacatacaatactcaattagcaatcgaagtatttgtaatattagtctgaacctgagactaacaactgattccaagcacgt 48205681  T
Q  216 caaaatcctccaaagaat 233  Q
    ||||||||||||||||||    
T  48205680 caaaatcctccaaagaat 48205663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 26984725 - 26984847
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatgctctaaactgtgaagaaattctaaatttataacaaggctttgcgtgctttt 115  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||||   |||  |||| |||||| ||||||||||||| || |||| ||||| |    
T  26984725 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgcttctaacaatgaacaaattccaaatttataacaaagccttgcctgcttgt 26984824  T
Q  116 catacttctgagcgatgtgggac 138  Q
    ||||||||||| |||||||||||    
T  26984825 catacttctgaccgatgtgggac 26984847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 26998798 - 26998920
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatgctctaaactgtgaagaaattctaaatttataacaaggctttgcgtgctttt 115  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||||   |||  |||| |||||| ||||||||||||| || |||| ||||| |    
T  26998798 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgcttctaacaatgaacaaattccaaatttataacaaagccttgcctgcttgt 26998897  T
Q  116 catacttctgagcgatgtgggac 138  Q
    ||||||||||| |||||||||||    
T  26998898 catacttctgaccgatgtgggac 26998920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 3461200 - 3461248
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  3461200 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 3461248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 11652450 - 11652498
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  11652450 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 11652498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 49106587 - 49106635
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  49106587 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 49106635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 49108691 - 49108739
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  49108691 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 49108739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 50077257 - 50077305
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  50077257 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 50077305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 140
Target Start/End: Complemental strand, 26982576 - 26982466
Alignment:
Q  31 acttgatcttagccaaaaggccgagaaag-gtatgct-ctaaactgt-gaagaaattctaaatttataacaaggctttgcgtgcttttcatacttctgag 127  Q
    |||||||||||||||| |||||||||||  ||||||| |||   ||| ||| |||||| ||||||||||||| ||||||| ||||| ||||| ||||||     
T  26982576 acttgatcttagccaagaggccgagaaaatgtatgctactag--tgtcgaacaaattccaaatttataacaaagctttgcctgcttgtcatatttctgac 26982479  T
Q  128 cgatgtgggacat 140  Q
    |||||||||||||    
T  26982478 cgatgtgggacat 26982466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 34496895 - 34496944
Alignment:
Q  89 atttataacaaggctttgcgtgcttttcatacttctgagcgatgtgggac 138  Q
    |||||||| ||||||||||||||||  ||||||| ||| |||||||||||    
T  34496895 atttataaaaaggctttgcgtgcttcccatacttttgaacgatgtgggac 34496944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 40054361 - 40054313
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  40054361 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 40054313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 41841210 - 41841258
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  41841210 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 41841258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 44879032 - 44878984
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  44879032 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 44878984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 44880889 - 44880937
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  44880889 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 44880937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 37679804 - 37679757
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtat 63  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||    
T  37679804 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtat 37679757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 10944457 - 10944505
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || |||||||||||||||||||| |||||||||||||    
T  10944457 aagaacagatactacacttgatcttagccaaaaggtcgagaaaggtatg 10944505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 37682106 - 37682058
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || |||||||||||||||||||||||||||| |||||    
T  37682106 aagaacagatactacacttgatcttagccaaaaggccgagaaatgtatg 37682058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 42872514 - 42872556
Alignment:
Q  22 agatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||| || |||| |||||||||||||||||||||||||||||    
T  42872514 agatactacacttaatcttagccaaaaggccgagaaaggtatg 42872556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 10791710 - 10791758
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  10791710 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 10791758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 10795948 - 10795996
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  10795948 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 10795996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 30521291 - 30521243
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||| |||||||||| |||||||||||||    
T  30521291 aagaacagatactacacttgatctcagccaaaaggtcgagaaaggtatg 30521243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 8875738 - 8875691
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtat 63  Q
    ||||||||||| || ||||||||||||||||||||||| |||| ||||    
T  8875738 aagaacagatattacacttgatcttagccaaaaggccgggaaatgtat 8875691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 1716510 - 1716558
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  1716510 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 1716558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 3643689 - 3643641
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  3643689 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 3643641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 7525017 - 7524969
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  7525017 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 7524969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 2841075 - 2841123
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  2841075 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 2841123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 8973361 - 8973313
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  8973361 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 8973313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 8979371 - 8979323
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  8979371 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 8979323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 9008070 - 9008022
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  9008070 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 9008022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 9023496 - 9023448
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  9023496 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 9023448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 9026835 - 9026787
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  9026835 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 9026787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 30732057 - 30732009
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  30732057 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 30732009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 32918129 - 32918081
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  32918129 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 32918081  T

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Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 43850098 - 43850050
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  43850098 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 43850050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 19232457 - 19232504
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtat 63  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||    
T  19232457 aagaacagatattacacttgatcttagccaaaaggccgagaaaggtat 19232504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 30734037 - 30733990
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtat 63  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||    
T  30734037 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtat 30733990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 8984742 - 8984694
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||| ||| || ||||||||||||||||||||||||||||||||||    
T  8984742 aagaacaaatactacacttgatcttagccaaaaggccgagaaaggtatg 8984694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 9020896 - 9020848
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || |||||||||||||||||||||||||||| |||||    
T  9020896 aagaacagatactacacttgatcttagccaaaaggccgagaaatgtatg 9020848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 9032102 - 9032054
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||| ||||||||||||||||||||||    
T  9032102 aagaacagatactacacttgatcttaaccaaaaggccgagaaaggtatg 9032054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 9030447 - 9030405
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaa 58  Q
    ||||||||||| || |||||||||||||||||||||| |||||    
T  9030447 aagaacagatactacacttgatcttagccaaaaggccaagaaa 9030405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 14652574 - 14652526
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  14652574 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 14652526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 14654398 - 14654446
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  14654398 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 14654446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 14662365 - 14662317
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  14662365 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 14662317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 14664189 - 14664237
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  14664189 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 14664237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 14667169 - 14667217
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  14667169 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 14667217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 14669767 - 14669815
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  14669767 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 14669815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 14674530 - 14674482
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  14674530 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 14674482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 14676681 - 14676633
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  14676681 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 14676633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 14679908 - 14679860
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  14679908 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 14679860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 14683799 - 14683751
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  14683799 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 14683751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 14706137 - 14706089
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  14706137 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 14706089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 14708627 - 14708579
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  14708627 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 14708579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 14716340 - 14716292
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  14716340 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 14716292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 28366257 - 28366305
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  28366257 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 28366305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 33988119 - 33988071
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  33988119 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 33988071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 38175588 - 38175636
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  38175588 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 38175636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 14681648 - 14681601
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtat 63  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||    
T  14681648 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtat 14681601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 11872539 - 11872585
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggta 62  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||    
T  11872539 aagaacagatagtacacttgatcttagtcaaaaggccgagaaaggta 11872585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 59
Target Start/End: Complemental strand, 37422203 - 37422175
Alignment:
Q  31 acttgatcttagccaaaaggccgagaaag 59  Q
    |||||||||||||||||||||||||||||    
T  37422203 acttgatcttagccaaaaggccgagaaag 37422175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 15758562 - 15758608
Alignment:
Q  17 agaacagatagtatacttgatcttagccaaaaggccgagaaaggtat 63  Q
    |||||||||| || ||||||||||||||||||||| |||||||||||    
T  15758562 agaacagatattacacttgatcttagccaaaaggctgagaaaggtat 15758608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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