View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14392_high_7 (Length: 603)
Name: NF14392_high_7
Description: NF14392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14392_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 512; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 34 - 590
Target Start/End: Original strand, 47879858 - 47880414
Alignment:
| Q |
34 |
ctgcagttagttgatacatcagcctgagaacatgaagattggacatcgcacaagtgcgatgagttcggattagctgagatcaactgaaggaaactggaac |
133 |
Q |
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| T |
47879858 |
ctgcagttagttgatacatcagcctgagaacatgaagattggacatcgcacaagtgcgatgagttcggattagctgaggtcaactgaaggaaactggaac |
47879957 |
T |
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| Q |
134 |
tgtaaacactacatttcttattcgttgtttcagttgagtttcagccaataatttcaactgacctatatatattgcaaggaattgttttgcagtagtatat |
233 |
Q |
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| T |
47879958 |
tgtaaacactacatttcttatccgtcgtttcagttgagtttcagccaataatttcaactgaccaatatatattgcaaggaattgttttgcagtagtatat |
47880057 |
T |
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| Q |
234 |
ctccaaactttgtccatcattagtgcaccnnnnnnnggacgaatgtcgttgcacagtatttgcaacataaaggggaaatttttaacttctgggtcagtat |
333 |
Q |
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| T |
47880058 |
ctccaaactttgtccatcattagtgcaccaaaaaaaggacgaatgtcgttgcacagtatttgcaacataaaggggaaatttttaacttctgggtcagtat |
47880157 |
T |
|
| Q |
334 |
caactctgccaatcgagtgtttcatgttgtaaactgtaggctttaacaaaggacacaagttagcaagactcgtgtttaagtatgtccgtcctaaaaacca |
433 |
Q |
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| T |
47880158 |
caactctgccaatcgagtgtttcatgttgtaaactgtaggctttaacaaaggacacaagttagcaagactcgtgtttaagtatgtccgtcctaaaaacca |
47880257 |
T |
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| Q |
434 |
acatgttctccgatacaaaatgatgttaatttttatttttatcaccgcaaaactcgatgaagttaaaaacgaacgtgtcgctccataactaatttctgtt |
533 |
Q |
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| T |
47880258 |
acatgttctccgatacaaaatgatgttaatttttatttttatcaccgcaaaactcgatgaagttaaaaacgaatgtgtcgctccataactaatttctgct |
47880357 |
T |
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| Q |
534 |
aactgtaactaactttggcaaaccaaacctctgcaattataggtctcatacaaactg |
590 |
Q |
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| T |
47880358 |
aactgtaactaactttggcaaaccaaacctctgcaattataggtctcatacaaactg |
47880414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 44728329 - 44728393
Alignment:
| Q |
116 |
actgaaggaaactggaactgtaaacactacatttcttattcgttgtttcagttgagtttcagcca |
180 |
Q |
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| T |
44728329 |
actgaacgaaactggaataataaacactacatttcttataggttgtttcagttcagtttcagcca |
44728393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 39241398 - 39241337
Alignment:
| Q |
116 |
actgaaggaaactggaactgtaaacactacatttcttattcgttgtttcagttgagtttcag |
177 |
Q |
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| T |
39241398 |
actgaatgaaactggaactgtaagcacaacatttcttattggtcgtttcagatgagtttcag |
39241337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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