View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14392_high_75 (Length: 210)
Name: NF14392_high_75
Description: NF14392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14392_high_75 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 12 - 194
Target Start/End: Original strand, 7635411 - 7635593
Alignment:
| Q |
12 |
gaatatgattaaaggtgaatttatttcggcggggaataattcaatttgaggcacaatcatgtgtcaaaggttgtggctcctgtgaaatctccgatcatcn |
111 |
Q |
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| T |
7635411 |
gaatatgattaaaggtgaatttatttcggcggggaataattcaatttgaggcacaatcatgtgtcaaaggttgtggctcctgtgaaatctccgatcatct |
7635510 |
T |
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| Q |
112 |
nnnnnnactttgtaatcattttggtatggcctggtacctggttcgtcaatggttaggtatctatactgcggatccctttacat |
194 |
Q |
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| T |
7635511 |
ttttttactttgtaatcattttggtatggcctggtacctggttcgtcaatggttaggtatctatactgcggatccctttacat |
7635593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 26 - 189
Target Start/End: Complemental strand, 50372093 - 50371930
Alignment:
| Q |
26 |
gtgaatttatttcggcggggaataattcaatttgaggcacaatcatgtgtcaaaggttgtggctcctgtgaaatctccgatcatcnnnnnnnactttgta |
125 |
Q |
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| T |
50372093 |
gtgaatttatttcgggggggagtttttcatattgagacgcagtcatgtgtcagtggatgtggctaacgtgaaacgtccgatcatcttttcttactttgta |
50371994 |
T |
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| Q |
126 |
atcattttggtatggcctggtacctggttcgtcaatggttaggtatctatactgcggatccctt |
189 |
Q |
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| T |
50371993 |
atcatttcggtatggtatggtatctggttcgtcaatggttaggtgtctataatgcggatccctt |
50371930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 189
Target Start/End: Complemental strand, 5883420 - 5883351
Alignment:
| Q |
119 |
ctttgtaatcattttggtatggcctggtacctggttcgtcaatggttaggtatctatactgcggatccctt |
189 |
Q |
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| T |
5883420 |
ctttgtaatcattttggtatgttctggtatctggttcgtcagtggttaggtgt-tatactgcggatacctt |
5883351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 146; Significance: 4e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 12 - 194
Target Start/End: Complemental strand, 8915137 - 8914955
Alignment:
| Q |
12 |
gaatatgattaaaggtgaatttatttcggcggggaataattcaatttgaggcacaatcatgtgtcaaaggttgtggctcctgtgaaatctccgatcatcn |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
8915137 |
gaatatgattaaaggtgaatttatttcggcggggaataattcaatttgaggcacaatcatgtgtcaaaggttgtggctccagtgaaatctcagatcatct |
8915038 |
T |
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| Q |
112 |
nnnnnnactttgtaatcattttggtatggcctggtacctggttcgtcaatggttaggtatctatactgcggatccctttacat |
194 |
Q |
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| T |
8915037 |
ttttttactttgtaatcattttgatatggcctggtacctggttcgtcaatggttaggtatctatactacggatccctttacat |
8914955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 189
Target Start/End: Complemental strand, 33880263 - 33880097
Alignment:
| Q |
23 |
aaggtgaatttatttcggcggggaa-taattcaatttgaggcacaatcatgtgtcaaaggttgtggctcctgtgaaatctccgatcatcnnnnnnnactt |
121 |
Q |
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|||||||| ||||||||| |||| | ||||||| ||||||| || |||||||||| | |||||||| |||||| |||||||||| ||| |
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| T |
33880263 |
aaggtgaaattatttcggagggggagtaattcatattgaggcgcagtcatgtgtcagtgagtgtggctcaagtgaaacttccgatcatcttttcttgctt |
33880164 |
T |
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| Q |
122 |
tgtaatcattttggtatggcctggtacctggttcgtcaatggttaggtatctatactgcggatccctt |
189 |
Q |
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| T |
33880163 |
tgtaatcagtt-ggtatggtctggtatatggatcgtcaatggttaggtgtctatactgcggacccctt |
33880097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 30376210 - 30376146
Alignment:
| Q |
119 |
ctttgtaatcattttggtatggcctggtacctggttcgtcaatggttaggtatctatactgcgga |
183 |
Q |
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| T |
30376210 |
ctttgtaatcaatttggtatggtttgatttctggttcgtcaatggttaggtgtctatactacgga |
30376146 |
T |
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