View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14392_low_10 (Length: 567)
Name: NF14392_low_10
Description: NF14392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14392_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 501; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 8 - 548
Target Start/End: Complemental strand, 47800415 - 47799876
Alignment:
| Q |
8 |
ggacatcatcatatacagttgtttcaaggttgtcgctcataactatgataacatatagttaactccttctcggcggttaacctttgaattttatcaaata |
107 |
Q |
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| T |
47800415 |
ggacatcatcatatacagttgtttcaaggctgtcgctcataactatgataacatatagttaactccttctcggcggttaacctttgaattttatcaaata |
47800316 |
T |
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| Q |
108 |
aacaaatagattcagacctgcaaacagataaccttcagacattcatatcgttatctcttgattccatccactacacaatcatctctatacctctgattcg |
207 |
Q |
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| T |
47800315 |
aacaaatagattcagacctgcaaacagataaccttcagacattcatatcgttatctcttgattccatccactacacaatcatctctatacctctgattcg |
47800216 |
T |
|
| Q |
208 |
tgtaagaaaagtccttaacttaggtaaattattgcttgtcttagattgcattttgtaaaggcacgaggaataatagacaatgaaatatcaaaaccaaccg |
307 |
Q |
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| T |
47800215 |
tgtaagaaaagtccttaacttaggtaaattattgcttgtcttagattgcattttg-aaaggcacgaggaataatagacaatgaaatatcaaaaccaaccg |
47800117 |
T |
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| Q |
308 |
aaatagaaaacacaacaaaccattagaattttgtttgatgagtgagttgaatttgcactgaatttttgagcctacagcagtagtaatattagaagtgcat |
407 |
Q |
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| T |
47800116 |
aaatagaaaacacaacaaaccattagaattttgtttgatgagtgagttgaatttgcactgaatttttgagcctacagcagtagtaatattagaagtgcat |
47800017 |
T |
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| Q |
408 |
catatacttcaaaatgtaaaatgcataactacttgcactagnnnnnnnnttatggctcacctcatttaactttatctataaccaatatagttgccttcaa |
507 |
Q |
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| T |
47800016 |
catatacttcaaaatgtaaaatgcataactacttgcactagaaaaaaaaatatggctcacctcatttaactttatctataaccaatatagttgccttcaa |
47799917 |
T |
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| Q |
508 |
gtgcaatggcaccacaataaaatcagcctccgaccggtgta |
548 |
Q |
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| T |
47799916 |
gtgcaatggcaccacaataaaatcagcctccgaccggtgta |
47799876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 83 - 173
Target Start/End: Complemental strand, 48755673 - 48755583
Alignment:
| Q |
83 |
gttaacctttgaattttatcaaataaacaaatagattcagacctgcaaacagataaccttcagacattcatatcgttatctcttgattcca |
173 |
Q |
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| T |
48755673 |
gttaacttttgcattttatcaaacaagtaaatagtttcagacctgcaaatagataagattcagaccttcctacctttatctcttgattcca |
48755583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 185 - 330
Target Start/End: Original strand, 11326829 - 11326975
Alignment:
| Q |
185 |
atcatctctatacctctgattcgtgtaagaaaagtcc-ttaacttaggtaaattattgcttgtcttagattgcattttgtaaaggcacgaggaataatag |
283 |
Q |
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| T |
11326829 |
atcatatctatacctctgattcatgagagaaatgtcctttaccttaggttaatcattgattctcttagattgcatatcgtgaaggtttgaggaatcatag |
11326928 |
T |
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| Q |
284 |
acaatgaaatatcaaaaccaaccgaaatagaaaacacaacaaaccat |
330 |
Q |
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| T |
11326929 |
ccatttaaatacaaagagcaactcaaatagaaaacacaataaaccat |
11326975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 185 - 330
Target Start/End: Original strand, 11484850 - 11484996
Alignment:
| Q |
185 |
atcatctctatacctctgattcgtgtaagaaaagtcc-ttaacttaggtaaattattgcttgtcttagattgcattttgtaaaggcacgaggaataatag |
283 |
Q |
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||||| |||||||||||||||| || ||||| |||| ||| ||||||| ||| |||| || ||||||||||||| | || |||| ||||||| |||| |
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| T |
11484850 |
atcatatctatacctctgattcatgagagaaatgtcctttaccttaggttaatcattgattctcttagattgcatatcgtgaaggtttgaggaatcatag |
11484949 |
T |
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| Q |
284 |
acaatgaaatatcaaaaccaaccgaaatagaaaacacaacaaaccat |
330 |
Q |
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| T |
11484950 |
ccatttaaatacaaagagcaactcaaatagaaaacacaataaaccat |
11484996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 212 - 283
Target Start/End: Complemental strand, 28730988 - 28730916
Alignment:
| Q |
212 |
agaaaagtccttaacttaggtaaattattgctt-gtcttagattgcattttgtaaaggcacgaggaataatag |
283 |
Q |
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| T |
28730988 |
agaaatgtccttaacttaggtaaatcattgctttgtcttggattgcattttgtaaaggcatgaggaatcatag |
28730916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 212 - 283
Target Start/End: Complemental strand, 28735679 - 28735607
Alignment:
| Q |
212 |
agaaaagtccttaacttaggtaaattattgctt-gtcttagattgcattttgtaaaggcacgaggaataatag |
283 |
Q |
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||||| ||||||||||||||||||| ||||||| ||||| |||||||||||||||||||| ||||||| |||| |
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| T |
28735679 |
agaaatgtccttaacttaggtaaatcattgctttgtcttggattgcattttgtaaaggcatgaggaatcatag |
28735607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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