View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14392_low_13 (Length: 556)
Name: NF14392_low_13
Description: NF14392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14392_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 17 - 539
Target Start/End: Complemental strand, 15572241 - 15571725
Alignment:
| Q |
17 |
aaaataattttcacaagagatcatcaacctagcatattattactagtccaaatcatgggatatatatttgttttttgcacacttaaattcaagatttaaa |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
15572241 |
aaaataattttcacaagagatcatcaacctagcatattattactagtccaatt-atg---tatatatttgttttttgcacacttaaattcaagatttaaa |
15572146 |
T |
|
| Q |
117 |
tctacaacaaagtagtagatcatcacatgttagtctactatacggttgcattcactctttgctttattaaaacaaagttagtaaaggaagcaatttccta |
216 |
Q |
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|||| | ||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15572145 |
tctagaccaaagtattagatcatcacatgttagtctacta--cggtagcattcactctttgctttattaaaacaaagttagtaaaggaagcaatttccta |
15572048 |
T |
|
| Q |
217 |
atagnnnnnnntagaaggtagaattaaaattttgaagtgaaatcttgtgtgataagatacaaccatgttgtcctgatcatgttattctcaaagaacatag |
316 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15572047 |
ttagacaaaaatagaaggtagaattaaaattttgaagtgaaatcttgtgtgataagatacaaccatgttgtcctgatcatgttattctcaaagaacatag |
15571948 |
T |
|
| Q |
317 |
agcagtaaagaagaggaaagatagtgaaagacagatactctctgtcggtttcaacttcatatcccttaggaacttgaagagaaagctaagatcatgtggc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15571947 |
agcagtaaagaagaggaaagatagtgaaagacagatactctctgtcggtttcaacttcatatcccttaggaacttgaagagaaagctaagatcatgtggc |
15571848 |
T |
|
| Q |
417 |
agtgtacctcttcacttgaaaatgacttggcannnnnnnaaagatgattattctctcttttaactttcttccattcactctgcaatatctttctatattc |
516 |
Q |
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|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15571847 |
agtgtacctcttcacttgaaaatgacttggcatttttttaaagttgattattctctcttttaactttcttccattcactctgcaatatctttctatattc |
15571748 |
T |
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| Q |
517 |
caatttatatatatgccttgagt |
539 |
Q |
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||||||||||||||||||||||| |
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| T |
15571747 |
caatttatatatatgccttgagt |
15571725 |
T |
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