View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14392_low_14 (Length: 554)
Name: NF14392_low_14
Description: NF14392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14392_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 296 - 537
Target Start/End: Original strand, 42225794 - 42226035
Alignment:
| Q |
296 |
aggaatttgttgaacaaaaacacacgtaccaatgtagtcggtgaggactcttccgtcggagaaacgaccggcaggtttgccgggaaaggtgataccataa |
395 |
Q |
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| T |
42225794 |
aggaatttgttgaacaaaaacacacgtaccaatgtagtcggtgaggactcttccgtcggagaaacgaccggcaggtttgccgggaaaggtgataccataa |
42225893 |
T |
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| Q |
396 |
gggtgtttccatgaattagccaaacctcttttgatgttacctgtgtctgcatatgaatctccaaagacaaacaattttgatattatacccttatgatcat |
495 |
Q |
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| T |
42225894 |
gggtgtttccatgaattagccaaacctcttttgatgttacctgtgtctgcatatgaatctccaaagacaaacaattttgatattatacccttatgatcat |
42225993 |
T |
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| Q |
496 |
gatgatgtttttgaagattaacttcagcttctaccacccttc |
537 |
Q |
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| T |
42225994 |
gatgatgtttttgaagattaacttcagcttctaccacccttc |
42226035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 42225481 - 42225710
Alignment:
| Q |
1 |
taaattaacattttctataattttagtttctaaa-----ctatctaaatatgaaaggtataattcataaagtacataaacgcagacgatttagttcctgc |
95 |
Q |
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| T |
42225481 |
taaattaacattttctataattttagtttctaaattaaactatctaaatatgaaaggtataatccataaagtatataaaagcagacgatttagttcctgc |
42225580 |
T |
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| Q |
96 |
tcaagatgccatttccttaatagaaagattttcatgtattttaaagactaagttgataaatttcatatacgttaaaaactacttattatattcatgtagt |
195 |
Q |
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| T |
42225581 |
tcaagatgccatttccttaatagaaagattttcatgtattttaaagactaagttgataaatttcatatacgttaaaaactacttattatattcatgtagt |
42225680 |
T |
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| Q |
196 |
ttaagaactaaatcaaaaacaaaatgatag |
225 |
Q |
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| T |
42225681 |
ttaagaactaaatcaaaaacaaaatgatag |
42225710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 267
Target Start/End: Original strand, 42225724 - 42225765
Alignment:
| Q |
226 |
agaatgagtcaaaagcaaaaaacatctcacgattacccgtac |
267 |
Q |
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| T |
42225724 |
agaatgagtcaaaagcaaaaaacatctaacgataacacgtac |
42225765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 473
Target Start/End: Original strand, 41754878 - 41754916
Alignment:
| Q |
435 |
cctgtgtctgcatatgaatctccaaagacaaacaatttt |
473 |
Q |
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| T |
41754878 |
cctgtgtcagcatatgaatctccaaatacaaacaatttt |
41754916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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