View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14392_low_17 (Length: 514)
Name: NF14392_low_17
Description: NF14392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14392_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 6 - 283
Target Start/End: Original strand, 53543 - 53821
Alignment:
| Q |
6 |
gtgttcccttgcgataaatgagggcaaatagtctctaaaaattacatgtcgtttttaaataat-aattatgtgagtaannnnnnnatttaattataataa |
104 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
53543 |
gtgtttccttgcgataaatgagggcaaatagtctctaaaaattacatgtcatttttaaataattaattatgtgagtaatttttttatttaattataataa |
53642 |
T |
|
| Q |
105 |
aataatgatatcatgtttattacatattgtctttatctaacttcatatcctatcatgtttatatcataatatgaccatcagacgggttatgtatgcccta |
204 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
53643 |
aataatgatatcatgtttattacatattgcctttatctaacttcatatcctatcatgtgtatatcataatatgaccatcagacgggttatgtatgcgcta |
53742 |
T |
|
| Q |
205 |
aatctggtttgcgaatcgaatattgcccttctcccatcaaaaattgctcactcacatacaaacttctcaaaatacctat |
283 |
Q |
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|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53743 |
aatctggtttgcaaatcgaatattgctcttctcccatcaaaaattgctcactcacatacaaacttctcaaaatacctat |
53821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 290 - 499
Target Start/End: Original strand, 53869 - 54080
Alignment:
| Q |
290 |
ggagaagagcaatattcgtgcaagtctataagttcactatttcttgcgataacttgcataagacatttggaagctacaacataagtgctcattaaagcat |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53869 |
ggagaagagcaatattcgtgcaagtctataagttcactatttcttgcgataacttgcataagacatttggaagctacaacataagtgctcattaaagcat |
53968 |
T |
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| Q |
390 |
tctatcatcattacatatgaaatgtcaaacct--nnnnnnnnnnnnnnnnnnngataaacagcaacgagggagccggaataaaaaattggtgactaaatg |
487 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53969 |
tctatcatcattacatatgaaatgtcaaacctaaaaaaaaataaaaaatatatgataaacagcaacgagggagccggaataaaaaattggtgactaaatg |
54068 |
T |
|
| Q |
488 |
aggtcatatata |
499 |
Q |
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|||||||||||| |
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| T |
54069 |
aggtcatatata |
54080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 221 - 280
Target Start/End: Complemental strand, 53886 - 53827
Alignment:
| Q |
221 |
cgaatattgcccttctcccatcaaaaattgctcactcacatacaaacttctcaaaatacc |
280 |
Q |
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|||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
53886 |
cgaatattgctcttctcccataaaaaattgttcactcacatacaaacttctcaaaatacc |
53827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 5155537 - 5155501
Alignment:
| Q |
232 |
cttctcccatcaaaaattgctcactcacatacaaact |
268 |
Q |
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|||||||||||||||||||||| |||||||||||||| |
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| T |
5155537 |
cttctcccatcaaaaattgctccctcacatacaaact |
5155501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 90 - 122
Target Start/End: Complemental strand, 8490904 - 8490872
Alignment:
| Q |
90 |
atttaattataataaaataatgatatcatgttt |
122 |
Q |
| |
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||||||||||||||| ||||||||||||||||| |
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|
| T |
8490904 |
atttaattataataagataatgatatcatgttt |
8490872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 226 - 268
Target Start/End: Complemental strand, 31893956 - 31893914
Alignment:
| Q |
226 |
attgcccttctcccatcaaaaattgctcactcacatacaaact |
268 |
Q |
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||||| ||||||||||| |||||||||||||| |||||||||| |
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| T |
31893956 |
attgctcttctcccatccaaaattgctcactctcatacaaact |
31893914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 90 - 118
Target Start/End: Original strand, 39351552 - 39351580
Alignment:
| Q |
90 |
atttaattataataaaataatgatatcat |
118 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
39351552 |
atttaattataataaaataatgatatcat |
39351580 |
T |
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