View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14392_low_18 (Length: 496)
Name: NF14392_low_18
Description: NF14392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14392_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 1 - 478
Target Start/End: Original strand, 41716455 - 41716932
Alignment:
| Q |
1 |
tgagaaacttcactagtcaccagatgctaaccagttcattttcaacatcacccacataataacagaagaaacaataaaatgatgtggacctattgccaac |
100 |
Q |
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| T |
41716455 |
tgagaaatttcactagtcaccagatgctaaccagttcattttcaacatcacccacataataacagaagaaacaataaaatgatgtggacctattgccaac |
41716554 |
T |
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| Q |
101 |
tttgattgtcatatgacctattgccaaatcttcctttgagccacacatatgtggtagttttttaacgctgagacgaaattgcccaagactaataaaccaa |
200 |
Q |
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| T |
41716555 |
tttgattgtcatatgacctattgccaaatcttcctttgagccacacatatgcggtagttttttaatgctgagacgaaattgcccaagactaataaaccaa |
41716654 |
T |
|
| Q |
201 |
ctaaataaaatgagacaacccacatattcttgtaaacaggacactgcaaaaaatacctaagttttcctcccagatatccaaggtgaacagaatataattt |
300 |
Q |
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| T |
41716655 |
ctaaataaaatgagacaacccacatattcttgtaaacaggacactgcaaaaaatacctaagttttcctcccagatatccaaggtgaacagaatataattt |
41716754 |
T |
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| Q |
301 |
gacgcgaagtggggtgataatggattgatgagaacatgggaggaataattggtgaaaatgatcttttagagcagtatagcaaatacaaaggtgcaaacag |
400 |
Q |
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| T |
41716755 |
gacgcaaagtggggtgataatggatttatgagaacatgggaggaataattggtgaaaatgatcttttagagcagtatagcaaatacaaaggtgcaaacag |
41716854 |
T |
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| Q |
401 |
agagaaggggaaaaatctctctggttttcaagccaaaatttcagaagtttagaatattaaagactgaagtgcatatca |
478 |
Q |
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| T |
41716855 |
agagaaggggaaaaatctctctggttttcaagccaaaatttcagaagtttagaatattaaagactgaagtgcatatca |
41716932 |
T |
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