View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14392_low_19 (Length: 490)

Name: NF14392_low_19
Description: NF14392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14392_low_19
NF14392_low_19
[»] chr6 (8 HSPs)
chr6 (222-474)||(31968007-31968259)
chr6 (247-474)||(31964586-31964811)
chr6 (237-388)||(31969543-31969694)
chr6 (84-207)||(31958840-31958956)
chr6 (155-207)||(31966148-31966200)
chr6 (232-328)||(31958711-31958809)
chr6 (326-388)||(323743-323805)
chr6 (327-392)||(31672540-31672605)
[»] chr8 (2 HSPs)
chr8 (305-388)||(12224975-12225058)
chr8 (336-392)||(36643943-36643999)
[»] chr5 (4 HSPs)
chr5 (304-377)||(21782656-21782729)
chr5 (336-388)||(37063150-37063202)
chr5 (327-392)||(7096199-7096264)
chr5 (339-383)||(35960359-35960403)
[»] chr4 (3 HSPs)
chr4 (315-388)||(7368132-7368205)
chr4 (326-384)||(23676648-23676707)
chr4 (326-388)||(36734825-36734887)
[»] chr2 (2 HSPs)
chr2 (328-385)||(41240956-41241013)
chr2 (336-390)||(37033986-37034040)
[»] chr1 (4 HSPs)
chr1 (336-388)||(26184693-26184745)
chr1 (332-392)||(26293178-26293238)
chr1 (312-377)||(6265012-6265077)
chr1 (311-387)||(5150854-5150930)
[»] chr7 (3 HSPs)
chr7 (321-388)||(31002688-31002755)
chr7 (345-392)||(33601165-33601212)
chr7 (336-388)||(5006585-5006637)
[»] chr3 (5 HSPs)
chr3 (336-377)||(8697605-8697646)
chr3 (336-377)||(9049492-9049533)
chr3 (363-391)||(6241157-6241185)
chr3 (304-388)||(20192682-20192766)
chr3 (336-392)||(44284130-44284186)


Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 222 - 474
Target Start/End: Complemental strand, 31968259 - 31968007
Alignment:
Q  222 atcccttgcgttgcagcataccttgaatctcctttgcaatattatttccctattatatcggggggaaattcttgtaaactatatgttttgataaacaact 321  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  31968259 atcccttgcattgcagcataccttgaatctcctttgcaatattatttccctattatatcgggagaaaattcttgtaaactatatgttttgataaacaact 31968160  T
Q  322 taattaagtggttttgtataaactattcctacaataaaaagtaaaataaagtcaaactattttcataagctcacattgatagcttataaaatatgataaa 421  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31968159 taattaagtggttttgtataaactattcctacaatagaaaataaaataaagtcaaactattttcataagctcacaatgatagcttataaaatatgataaa 31968060  T
Q  422 accagcttaaggacatgtcttaagctctcccaagctgtctcagaaatgcttat 474  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  31968059 accagcttaaggacatgtcttaagctctcccaagctgtctcagaaatacttat 31968007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 247 - 474
Target Start/End: Complemental strand, 31964811 - 31964586
Alignment:
Q  247 aatctcctttgcaatattatttccctattatatcggggggaaattcttgtaaactatatgttttgataaacaacttaattaagtggttttgtataaacta 346  Q
    |||||||||||  |||||  ||||||||||||||||||| ||||||| |||||||||  |||||||||||| ||||||||||||||||||||||||||||    
T  31964811 aatctcctttgatatatttcttccctattatatcgggggaaaattctcgtaaactat--gttttgataaacgacttaattaagtggttttgtataaacta 31964714  T
Q  347 ttcctacaataaaaagtaaaataaagtc-aaactattttcataagctcacattgatagcttataaaatatgataaaaccagcttaaggacatgtcttaag 445  Q
    ||||||||||||||  |||||||||||| ||||| |||||||||||||||||||||||| ||||||||| | ||||| || |||||||   |||| ||||    
T  31964713 ttcctacaataaaagataaaataaagtcaaaactgttttcataagctcacattgatagc-tataaaataagctaaaaacaacttaagggtttgtcataag 31964615  T
Q  446 ctctcccaagctgtctcagaaatgcttat 474  Q
    ||||| |||| ||||||||||||||||||    
T  31964614 ctctcacaagatgtctcagaaatgcttat 31964586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 237 - 388
Target Start/End: Complemental strand, 31969694 - 31969543
Alignment:
Q  237 gcataccttgaatctcctttgcaatattatttccctattatatcggggggaaattcttgtaaact-atatgttttgataaacaacttaattaagtggttt 335  Q
    |||||||||||||||||||||| | |||  ||||||||||||| |||   ||||||| ||||||| |||||||||||||||||||||||||||||||||     
T  31969694 gcataccttgaatctcctttgctacattccttccctattatattgggaa-aaattctggtaaacttatatgttttgataaacaacttaattaagtggtta 31969596  T
Q  336 tgtataaactattcctacaataaaaagtaaaataaagtcaaactattttcata 388  Q
    | |||||||||||   | ||||||   ||||||||| ||||||||||||||||    
T  31969595 tttataaactatttacaaaataaatgataaaataaaatcaaactattttcata 31969543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 84 - 207
Target Start/End: Complemental strand, 31958956 - 31958840
Alignment:
Q  84 gcatcatgtcattaggatattttagttttgcagttgcaaaagcatgctcggattcgaattaactaactaaagagtttaacttacacggccagaagactag 183  Q
    ||||||| ||||| |||||| || | ||||||||| |||||| |||||||||| ||||       |||| || ||||||||||||||||||||||||| |    
T  31958956 gcatcatatcattgggatatgtttggtttgcagtttcaaaagtatgctcggatccgaa-------actatagtgtttaacttacacggccagaagactgg 31958864  T
Q  184 ttggaccctccaaaattgttgtta 207  Q
     ||| |||||||||| || |||||    
T  31958863 ctgggccctccaaaactgctgtta 31958840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 31966200 - 31966148
Alignment:
Q  155 gagtttaacttacacggccagaagactagttggaccctccaaaattgttgtta 207  Q
    |||||||| |||||||| ||||||||||| |||||||||||||| ||||||||    
T  31966200 gagtttaatttacacggtcagaagactagctggaccctccaaaactgttgtta 31966148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 232 - 328
Target Start/End: Complemental strand, 31958809 - 31958711
Alignment:
Q  232 ttgcagcataccttgaatctcctttgcaatattatttccctattatatcgg--ggggaaattcttgtaaactatatgttttgataaacaacttaattaa 328  Q
    |||| |||||||||||||||||||||| |||||  |||||||| |||      |||||||  || ||||||||| ||||||||||||||||||||||||    
T  31958809 ttgctgcataccttgaatctcctttgctatattccttccctataataatattaggggaaaaactcgtaaactatctgttttgataaacaacttaattaa 31958711  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 388
Target Start/End: Original strand, 323743 - 323805
Alignment:
Q  326 taagtggttttgtataaactattcctacaataaaaagtaaaataaagtcaaactattttcata 388  Q
    ||||||||||||||||| ||||| ||| | |||||  ||||||||| ||||||| ||||||||    
T  323743 taagtggttttgtataagctatttctatattaaaagataaaataaattcaaactgttttcata 323805  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 392
Target Start/End: Complemental strand, 31672605 - 31672540
Alignment:
Q  327 aagtggttttgtataaactattcctacaataaaaagtaaaataaagtcaaactattttcataagct 392  Q
    ||||| || ||||||||||||| | |  | ||||| ||||||||||||||||| ||||||||||||    
T  31672605 aagtgtttatgtataaactatttccatgacaaaaaataaaataaagtcaaactgttttcataagct 31672540  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 305 - 388
Target Start/End: Complemental strand, 12225058 - 12224975
Alignment:
Q  305 tgttttgataaacaacttaattaagtggttttgtataaactattcctacaataaaaagtaaaataaagtcaaactattttcata 388  Q
    ||||| ||||||||||||||||||| | || |||||||  |||| |||  | ||||  ||||||||||||||||||||||||||    
T  12225058 tgtttggataaacaacttaattaagagcttatgtataagttatttctaagacaaaagataaaataaagtcaaactattttcata 12224975  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 392
Target Start/End: Complemental strand, 36643999 - 36643943
Alignment:
Q  336 tgtataaactattcctacaataaaaagtaaaataaagtcaaactattttcataagct 392  Q
    ||||||| ||||| ||| |||||||  || | |||||||||||||||||||||||||    
T  36643999 tgtataagctatttctataataaaagatacagtaaagtcaaactattttcataagct 36643943  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 304 - 377
Target Start/End: Complemental strand, 21782729 - 21782656
Alignment:
Q  304 atgttttgataaacaacttaattaagtggttttgtataaactattcctacaataaaaagtaaaataaagtcaaa 377  Q
    |||||| ||||||||||||||||||||| || ||| ||| ||||| ||| || ||||  |||||||||||||||    
T  21782729 atgtttggataaacaacttaattaagtgtttatgtttaagctatttctataacaaaagctaaaataaagtcaaa 21782656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 336 - 388
Target Start/End: Complemental strand, 37063202 - 37063150
Alignment:
Q  336 tgtataaactattcctacaataaaaagtaaaataaagtcaaactattttcata 388  Q
    ||||||||||||| ||| || ||||  ||||||||||||||||||||||||||    
T  37063202 tgtataaactatttctataacaaaagataaaataaagtcaaactattttcata 37063150  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 392
Target Start/End: Complemental strand, 7096264 - 7096199
Alignment:
Q  327 aagtggttttgtataaactattcctacaataaaaagtaaaataaagtcaaactattttcataagct 392  Q
    ||||| || ||||||| ||||| ||| || ||||  |||||||||||||||| |||||||||||||    
T  7096264 aagtgcttatgtataagctatttctataacaaaagataaaataaagtcaaaccattttcataagct 7096199  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 383
Target Start/End: Original strand, 35960359 - 35960403
Alignment:
Q  339 ataaactattcctacaataaaaagtaaaataaagtcaaactattt 383  Q
    |||||||||| ||| |||||||  |||||||||||||||||||||    
T  35960359 ataaactatttctataataaaagataaaataaagtcaaactattt 35960403  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 315 - 388
Target Start/End: Complemental strand, 7368205 - 7368132
Alignment:
Q  315 aacaacttaattaagtggttttgtataaactattcctacaataaaaagtaaaataaagtcaaactattttcata 388  Q
    ||||||||| ||||| | || || |||||||||| |||  ||||||||||||||||||||||| | ||||||||    
T  7368205 aacaacttatttaagcgcttatgaataaactatttctatgataaaaagtaaaataaagtcaaattgttttcata 7368132  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 384
Target Start/End: Original strand, 23676648 - 23676707
Alignment:
Q  326 taagtggttttgtataaactattcctacaataaaaag-taaaataaagtcaaactatttt 384  Q
    |||||| |||||||||| |||||  |||||||||||| |||||||||||| |||||||||    
T  23676648 taagtgcttttgtataatctatttatacaataaaaagataaaataaagtcgaactatttt 23676707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 388
Target Start/End: Original strand, 36734825 - 36734887
Alignment:
Q  326 taagtggttttgtataaactattcctacaataaaaagtaaaataaagtcaaactattttcata 388  Q
    |||||| || ||||||| || || ||| || |||| |||||||||||||||||||||||||||    
T  36734825 taagtgcttatgtataatctctttctataacaaaaggtaaaataaagtcaaactattttcata 36734887  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 328 - 385
Target Start/End: Complemental strand, 41241013 - 41240956
Alignment:
Q  328 agtggttttgtataaactattcctacaataaaaagtaaaataaagtcaaactattttc 385  Q
    ||||||| ||||||||||||||||| || ||||  |||||||||||| ||||||||||    
T  41241013 agtggttatgtataaactattcctataacaaaatataaaataaagtcgaactattttc 41240956  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 390
Target Start/End: Original strand, 37033986 - 37034040
Alignment:
Q  336 tgtataaactattcctacaataaaaagtaaaataaagtcaaactattttcataag 390  Q
    ||||||||||||| ||| || ||||  |||||||||||||||| |||||||||||    
T  37033986 tgtataaactatttctataaaaaaagataaaataaagtcaaacgattttcataag 37034040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 336 - 388
Target Start/End: Original strand, 26184693 - 26184745
Alignment:
Q  336 tgtataaactattcctacaataaaaagtaaaataaagtcaaactattttcata 388  Q
    ||||||||||||| ||| || |||| |||||||||||||||| ||||||||||    
T  26184693 tgtataaactatttctataagaaaaggtaaaataaagtcaaattattttcata 26184745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 332 - 392
Target Start/End: Complemental strand, 26293238 - 26293178
Alignment:
Q  332 gttttgtataaactattcctacaataaaaagtaaaataaagtcaaactattttcataagct 392  Q
    |||||| |||| ||||| ||| || ||||||||||||||||||||| | ||||||||||||    
T  26293238 gttttgcataagctatttctataacaaaaagtaaaataaagtcaaattgttttcataagct 26293178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 377
Target Start/End: Original strand, 6265012 - 6265077
Alignment:
Q  312 ataaacaacttaattaagtggttttgtataaactattcctacaataaaaagtaaaataaagtcaaa 377  Q
    |||||||||||||||| ||| |||| ||||| ||| | ||| || ||||| |||||||||||||||    
T  6265012 ataaacaacttaattatgtgcttttatataagctacttctataacaaaaaataaaataaagtcaaa 6265077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 311 - 387
Target Start/End: Original strand, 5150854 - 5150930
Alignment:
Q  311 gataaacaacttaattaagtggttttgtataaactattcctacaataaaaagtaaaataaagtcaaactattttcat 387  Q
    |||| ||||||||||||| || || ||||| | ||||  |||||  ||||  |||||||||||||||||||||||||    
T  5150854 gatacacaacttaattaaatgcttatgtattagctatatctacaggaaaatataaaataaagtcaaactattttcat 5150930  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 388
Target Start/End: Original strand, 31002688 - 31002755
Alignment:
Q  321 ttaattaagtggttttgtataaactattcctacaataaaaagtaaaataaagtcaaactattttcata 388  Q
    ||||||||||| || ||||||||||||| | || | ||||  ||||||||||||||| ||||||||||    
T  31002688 ttaattaagtgcttatgtataaactatttcaaccacaaaagataaaataaagtcaaaatattttcata 31002755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 392
Target Start/End: Complemental strand, 33601212 - 33601165
Alignment:
Q  345 tattcctacaataaaaagtaaaataaagtcaaactattttcataagct 392  Q
    |||| ||||| |||||| ||||||||||||||||| ||||||||||||    
T  33601212 tatttctacactaaaaaataaaataaagtcaaactgttttcataagct 33601165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 388
Target Start/End: Complemental strand, 5006637 - 5006585
Alignment:
Q  336 tgtataaactattcctacaataaaaagtaaaataaagtcaaactattttcata 388  Q
    ||||||| ||||||||| || ||||  ||||||||||||||||| ||||||||    
T  5006637 tgtataagctattcctataacaaaagataaaataaagtcaaactgttttcata 5006585  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 377
Target Start/End: Original strand, 8697605 - 8697646
Alignment:
Q  336 tgtataaactattcctacaataaaaagtaaaataaagtcaaa 377  Q
    |||||||||||||||||||||||||  || ||||||||||||    
T  8697605 tgtataaactattcctacaataaaagatagaataaagtcaaa 8697646  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 377
Target Start/End: Original strand, 9049492 - 9049533
Alignment:
Q  336 tgtataaactattcctacaataaaaagtaaaataaagtcaaa 377  Q
    |||||||||||||||||||||||||  || ||||||||||||    
T  9049492 tgtataaactattcctacaataaaagatagaataaagtcaaa 9049533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 391
Target Start/End: Complemental strand, 6241185 - 6241157
Alignment:
Q  363 taaaataaagtcaaactattttcataagc 391  Q
    |||||||||||||||||||||||||||||    
T  6241185 taaaataaagtcaaactattttcataagc 6241157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 304 - 388
Target Start/End: Complemental strand, 20192766 - 20192682
Alignment:
Q  304 atgttttgataaacaacttaattaagtggttttgtataaactattcctacaataaaaagtaaaataaagtcaaactattttcata 388  Q
    |||||| |||||||| || ||||||||| || ||||||| |||||  || || ||||  ||||||||||||||||  ||||||||    
T  20192766 atgtttggataaacagctcaattaagtgcttatgtataagctatttatataacaaaagataaaataaagtcaaacagttttcata 20192682  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 392
Target Start/End: Complemental strand, 44284186 - 44284130
Alignment:
Q  336 tgtataaactattcctacaataaaaagtaaaataaagtcaaactattttcataagct 392  Q
    ||||||| ||||| ||| || ||||| ||||| ||||||||||| ||||||||||||    
T  44284186 tgtataagctatttctataacaaaaaataaaacaaagtcaaactgttttcataagct 44284130  T

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