View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14392_low_2 (Length: 804)

Name: NF14392_low_2
Description: NF14392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14392_low_2
NF14392_low_2
[»] chr3 (13 HSPs)
chr3 (1-260)||(11020195-11020455)
chr3 (413-607)||(11020474-11020670)
chr3 (605-786)||(11020774-11020955)
chr3 (460-604)||(11027359-11027504)
chr3 (605-737)||(11036788-11036921)
chr3 (17-157)||(42340308-42340448)
chr3 (17-84)||(27608934-27609001)
chr3 (17-84)||(34497403-34497470)
chr3 (17-154)||(53497051-53497188)
chr3 (17-76)||(647194-647253)
chr3 (17-158)||(55199526-55199667)
chr3 (87-180)||(647312-647406)
chr3 (17-83)||(24176860-24176926)
[»] chr7 (7 HSPs)
chr7 (17-180)||(29200986-29201150)
chr7 (17-158)||(22289256-22289397)
chr7 (17-180)||(16731925-16732089)
chr7 (17-180)||(17710059-17710223)
chr7 (21-158)||(9328637-9328774)
chr7 (17-95)||(16098568-16098646)
chr7 (17-81)||(30493641-30493705)
[»] chr4 (15 HSPs)
chr4 (17-158)||(37245883-37246024)
chr4 (17-158)||(29655697-29655838)
chr4 (17-158)||(32577079-32577220)
chr4 (17-179)||(43840337-43840501)
chr4 (17-158)||(56065644-56065785)
chr4 (17-180)||(49951305-49951469)
chr4 (15-158)||(28426198-28426341)
chr4 (15-158)||(49119429-49119572)
chr4 (17-146)||(26422633-26422762)
chr4 (17-158)||(2064868-2065009)
chr4 (17-158)||(51735003-51735143)
chr4 (17-81)||(51259560-51259624)
chr4 (1-180)||(28537802-28537980)
chr4 (17-158)||(55735024-55735165)
chr4 (17-158)||(21321542-21321685)
[»] chr8 (7 HSPs)
chr8 (15-158)||(7127238-7127381)
chr8 (17-158)||(478087-478228)
chr8 (17-158)||(8451154-8451295)
chr8 (17-158)||(185622-185762)
chr8 (17-158)||(23853947-23854088)
chr8 (17-82)||(598268-598333)
chr8 (132-180)||(13415015-13415064)
[»] chr5 (14 HSPs)
chr5 (17-158)||(8388101-8388242)
chr5 (17-180)||(25730800-25730964)
chr5 (17-158)||(26597488-26597629)
chr5 (17-180)||(15988780-15988944)
chr5 (1-158)||(20204970-20205127)
chr5 (17-158)||(27532937-27533078)
chr5 (17-158)||(4268114-4268255)
chr5 (21-158)||(22767292-22767429)
chr5 (17-158)||(41940768-41940908)
chr5 (16-149)||(27292458-27292591)
chr5 (17-180)||(12660308-12660472)
chr5 (17-158)||(11375544-11375685)
chr5 (17-158)||(34652285-34652426)
chr5 (17-82)||(32632606-32632671)
[»] chr6 (7 HSPs)
chr6 (19-158)||(30802024-30802163)
chr6 (17-155)||(15606025-15606163)
chr6 (17-180)||(28107131-28107295)
chr6 (16-158)||(19690909-19691051)
chr6 (17-158)||(15053206-15053347)
chr6 (1-180)||(14680154-14680334)
chr6 (131-180)||(29368201-29368251)
[»] chr1 (8 HSPs)
chr1 (17-172)||(44527253-44527409)
chr1 (15-158)||(25682666-25682809)
chr1 (17-158)||(36733711-36733852)
chr1 (17-158)||(48949755-48949896)
chr1 (1-158)||(44602767-44602924)
chr1 (17-158)||(51113330-51113471)
chr1 (17-82)||(2885314-2885379)
chr1 (53-180)||(48166229-48166357)
[»] chr2 (6 HSPs)
chr2 (32-180)||(88551-88700)
chr2 (17-158)||(34695935-34696076)
chr2 (17-158)||(34718347-34718488)
chr2 (16-81)||(13109899-13109964)
chr2 (21-82)||(9710046-9710107)
chr2 (17-158)||(12130669-12130810)
[»] scaffold0446 (1 HSPs)
scaffold0446 (17-158)||(201-342)


Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 11020195 - 11020455
Alignment:
Q  1 atagcacagatttttaaatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcat 100  Q
    |||||||||| || | ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||| |||    
T  11020195 atagcacagaattctgaatcaccatggcccggagacgatagaccttacactggagtagttaagtcagactcgaagacaacccagttccatttgttcccat 11020294  T
Q  101 ctgcaaagtaaatagcatcgaataaagctgttgcctccccctccaaaactgtcata-ttgtccactgccatttcatttgagttaaatgtcatgtgtgtgc 199  Q
    | ||||||||||||||||||| |||||||| || |||||||||||||| ||||||| |||||||||  ||||||||||||||||||||||| ||||||||    
T  11020295 cagcaaagtaaatagcatcgagtaaagctgatgtctccccctccaaaagtgtcatatttgtccactttcatttcatttgagttaaatgtcaagtgtgtgc 11020394  T
Q  200 cacatagacaactttgcacagtcagcatctaccaacatgggtaaaaatacgacaaatcaac 260  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  11020395 cacatagacaactttgcacagtcagcatctaccaacataggtaaaaatgcgacaaatcaac 11020455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 413 - 607
Target Start/End: Original strand, 11020474 - 11020670
Alignment:
Q  413 cctttcatctacccgtgacatgaccttttc--acatcaactaaagatttataatcaatccattttatctagttcacatgtgtcatgtccctcgttgtgat 510  Q
    ||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  11020474 cctttcatctacccgtgacgtgaccttttctcacatcaactaaagatttataatcaatctattttatctagttcacatgtgtcatgtccctcgttgtgat 11020573  T
Q  511 caatagataatgtgacggtaagagacaatgcaacttctccaacatcactttgttccttaacaagactggataaatagttggacaattgtgattttgg 607  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11020574 caatagataatgtgacggtaagagataatgcaacttctccaacatcactttgttccttaacaagactggataaatagttggacaattgtgattttgg 11020670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 605 - 786
Target Start/End: Original strand, 11020774 - 11020955
Alignment:
Q  605 tggttttactgctcattaaactaatctctacagttgctcgcatagaatattttagttcacacaaaagaaaatgtccattccattcaaaaagaagacaaca 704  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  11020774 tggttttactgctcattaaactaatctctacagttgctcgcatagaatattttagttcacacaaaa--aaatgtccattccattcaaaaagaagacaaca 11020871  T
Q  705 tgagtcgactgtgtcttaacacatgcataaaaccaactattagcaaatttagaaaa--agagagaaaatcagcaatatccgtaa 786  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  11020872 tgagtcgactgtgtcttaacacatgcataaaaccaactattagcaaatttagaaaaagagagagaaaatcagcaatatccgtaa 11020955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 460 - 604
Target Start/End: Original strand, 11027359 - 11027504
Alignment:
Q  460 ataatcaatccattttatctagttcacatgtgtcatgtccctcgttgtgatcaatagataatgtgacggtaagagacaatgcaacttctccaacatcact 559  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||    
T  11027359 ataatcaatccattttatctggttcacatgtgtcatgtccctcgttgtgatcagtagataatgtgacggtaaaatacaatgcaacttctccaacatcact 11027458  T
Q  560 ttgttccttaacaagactggataaatag-ttggacaattgtgattt 604  Q
    |||||||||||||||||| ||||||||| | |||||||||||||||    
T  11027459 ttgttccttaacaagactcgataaatagatgggacaattgtgattt 11027504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 605 - 737
Target Start/End: Original strand, 11036788 - 11036921
Alignment:
Q  605 tggttttactgctcattaaactaatctctacagttgctcgcatagaatattttagttcacacaaaagaaaa--tgtccattccattcaaaaagaagacaa 702  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||||| || |||||| ||| ||||  |||||||||||||| ||||||||||||    
T  11036788 tggttttactactccttaaactaatctctacagttgctcgcatagaatattt-agatcacaccaaaaaaaacatgtccattccattccaaaagaagacaa 11036886  T
Q  703 catgagtcgactgtgtcttaacacatgcataaaac 737  Q
    ||||||||||||||||||||| |||||||||||||    
T  11036887 catgagtcgactgtgtcttaatacatgcataaaac 11036921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 17 - 157
Target Start/End: Original strand, 42340308 - 42340448
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 116  Q
    |||||||||||||||||||||| ||| ||| ||||  ||||||| |||| |||||||||||||| | |  |||| ||||| |||||||||||| |||  |    
T  42340308 aatcaccatggcccggagacgacagagcttgcactaaagtagctgagtctgactcgaagacaactcggtcccatctgttcacatctgcaaagtgaatgac 42340407  T
Q  117 atcgaataaagctgttgcctccccctccaaaactgtcatat 157  Q
    ||||| ||  ||| |||||||||||||||| ||||||||||    
T  42340408 atcgagtagggctattgcctccccctccaacactgtcatat 42340448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 27608934 - 27609001
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccag 84  Q
    |||||||||||||||||||||||||  ||| |||| |||||||| |||| ||||||||||||||||||    
T  27608934 aatcaccatggcccggagacgatagcgcttgcactagagtagctgagtcggactcgaagacaacccag 27609001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 34497403 - 34497470
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccag 84  Q
    |||||||||||||||||||||||||  ||| |||| |||||||| |||| ||||||||||||||||||    
T  34497403 aatcaccatggcccggagacgatagcgcttgcactagagtagctgagtcggactcgaagacaacccag 34497470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 154
Target Start/End: Complemental strand, 53497188 - 53497051
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 116  Q
    |||||||||||||||||||||||||| ||| |||  |||||| | |||| |||||||||||||||| |  |||| ||||  |||| ||||||| ||  ||    
T  53497188 aatcaccatggcccggagacgatagagcttgcacaagagtagatgagtcggactcgaagacaacccggtcccatctgttagcatcagcaaagtgaagggc 53497089  T
Q  117 atcgaataaagctgttgcctccccctccaaaactgtca 154  Q
     || | ||| |||  |||||||||||| ||||||||||    
T  53497088 ctctagtaaggctactgcctccccctcaaaaactgtca 53497051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 647194 - 647253
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaaga 76  Q
    |||||||||||||||||||||||||| ||| |||| |||||| | |||||||||||||||    
T  647194 aatcaccatggcccggagacgatagagcttgcactagagtagatgagtcagactcgaaga 647253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 158
Target Start/End: Complemental strand, 55199667 - 55199526
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 116  Q
    |||||||||| |||| |||||||||  ||| |||  |||||||| |||| |||| ||||||||||| |  |||| ||||  || |  |||||| ||| ||    
T  55199667 aatcaccatgacccgtagacgatagcgcttgcaccagagtagctgagtcggacttgaagacaacccggtcccatctgtttccaacaacaaagtgaatggc 55199568  T
Q  117 atcgaataaagctgttgcctccccctccaaaactgtcatatt 158  Q
    ||||| ||| ||   |||||||||||||||||||||||||||    
T  55199567 atcgagtaaggcaactgcctccccctccaaaactgtcatatt 55199526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 180
Target Start/End: Original strand, 647312 - 647406
Alignment:
Q  87 ccatttgttctcatctgcaaagtaaatagcatcgaataaagctgttgcctccccctccaaaactgtcatatt-gtccactgccatttcatttgag 180  Q
    |||| ||||| |||| ||||||| |||  |||||| ||| |||| |||||||||||||| |||||||||||| | || |||||||||| ||||||    
T  647312 ccatctgttcacatcagcaaagtgaatgacatcgagtaaggctgctgcctccccctccataactgtcatattagcccgctgccatttcgtttgag 647406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 24176926 - 24176860
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaaccca 83  Q
    |||||||||| ||| ||||||||||| ||| |||| |||||| |  |||||||||||||||||||||    
T  24176926 aatcaccatgacccagagacgatagagcttgcactagagtagttgtgtcagactcgaagacaaccca 24176860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 4e-28; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 17 - 180
Target Start/End: Original strand, 29200986 - 29201150
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 116  Q
    |||||||||||||| ||||||||||| ||| |||| |||||||| |||||||||||||||||||||   ||||| ||||| |||| ||||||| |||  |    
T  29200986 aatcaccatggcccagagacgatagagcttgcactagagtagctgagtcagactcgaagacaacccgtttccatctgttcacatcagcaaagtgaatgac 29201085  T
Q  117 atcgaataaagctgttgcctccccctccaaaactgtcata-ttgtccactgccatttcatttgag 180  Q
    ||| | ||||  || | ||||||||||||||||||||||| |||||| ||| |||||| ||||||    
T  29201086 atcaagtaaacatgctacctccccctccaaaactgtcatatttgtccgctgtcatttcgtttgag 29201150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 17 - 158
Target Start/End: Complemental strand, 22289397 - 22289256
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 116  Q
    |||||||||||||||||||||||||  ||| |||| |||||||| |||| |||||||||||| ||| |  |||||||||| || | ||||||| ||| ||    
T  22289397 aatcaccatggcccggagacgatagcgcttgcactagagtagctgagtcggactcgaagacagcccggtcccatttgttcccaacggcaaagtgaatggc 22289298  T
Q  117 atcgaataaagctgttgcctccccctccaaaactgtcatatt 158  Q
    ||||| ||| ||     |||||||||||||||||||||||||    
T  22289297 atcgagtaaggcaaccacctccccctccaaaactgtcatatt 22289256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 17 - 180
Target Start/End: Complemental strand, 16732089 - 16731925
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 116  Q
    ||||||||||||||||||| |||||| ||| |||| ||||||   |||| |||||||||||||| | | ||||| ||||| |||| ||| ||| ||| ||    
T  16732089 aatcaccatggcccggagatgatagagcttgcactagagtagacgagtcggactcgaagacaactcggttccatctgttcgcatcagcagagtgaatggc 16731990  T
Q  117 atcgaataaagctgttgcctccccctccaaaactgtcata-ttgtccactgccatttcatttgag 180  Q
     |||| ||| |||  ||||||||||||||| ||||||||| ||| || |||||||||| ||||||    
T  16731989 ctcgagtaaggctactgcctccccctccaatactgtcatatttgccctctgccatttcgtttgag 16731925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 17 - 180
Target Start/End: Complemental strand, 17710223 - 17710059
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 116  Q
    ||||||||||||||||||| |||||| ||| |||| ||||||   |||| |||||||||||||| | | ||||| ||||| |||| ||| ||| ||| ||    
T  17710223 aatcaccatggcccggagatgatagagcttgcactagagtagacgagtcggactcgaagacaactcggttccatctgttcgcatcagcagagtgaatggc 17710124  T
Q  117 atcgaataaagctgttgcctccccctccaaaactgtcata-ttgtccactgccatttcatttgag 180  Q
     |||| ||| |||  ||||||||||||||| ||||||||| ||| || |||||||||| ||||||    
T  17710123 ctcgagtaaggctactgcctccccctccaatactgtcatatttgccctctgccatttcgtttgag 17710059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 158
Target Start/End: Original strand, 9328637 - 9328774
Alignment:
Q  21 accatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagcatcg 120  Q
    |||||| ||||  ||||||||| ||| |||| ||||| |  |||||||||| |||||||||| |  |||| ||||  |||| ||||||| ||||||| ||    
T  9328637 accatgtcccgctgacgatagagcttgcactagagtatcagagtcagactccaagacaacccggtcccatctgtttacatcagcaaagtgaatagcagcg 9328736  T
Q  121 aataaagctgttgcctccccctccaaaactgtcatatt 158  Q
    | ||| |||  |||||||||||||||||| ||||||||    
T  9328737 agtaaggctactgcctccccctccaaaacagtcatatt 9328774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 16098646 - 16098568
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgtt 95  Q
    ||||||||||||||||||||||| || |||  ||| |||||| | |||| |||||||||||||||| |  |||||||||    
T  16098646 aatcaccatggcccggagacgatggagcttgtactagagtagatgagtcggactcgaagacaacccggtcccatttgtt 16098568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 30493641 - 30493705
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacc 81  Q
    ||||||||||||||| |||||||||| ||| |||| |||||  | |||| |||||||||||||||    
T  30493641 aatcaccatggcccgaagacgatagagcttgcactagagtaattgagtcggactcgaagacaacc 30493705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 17 - 158
Target Start/End: Original strand, 37245883 - 37246024
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 116  Q
    |||||||||||||| ||||||| ||| ||| ||||  ||||||  ||||||||||||||||||||| |  |||| ||||| |||  ||||||| ||||||    
T  37245883 aatcaccatggcccagagacgaaagagcttgcactaaagtagcagagtcagactcgaagacaacccggtcccatctgttcacataagcaaagtgaatagc 37245982  T
Q  117 atcgaataaagctgttgcctccccctccaaaactgtcatatt 158  Q
    ||||| ||| |||  |||||||||||||||||||||||||||    
T  37245983 atcgagtaaggctactgcctccccctccaaaactgtcatatt 37246024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 17 - 158
Target Start/End: Original strand, 29655697 - 29655838
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 116  Q
    ||||||||||||||| ||| |||||| ||| |||| |||||||  ||||||||||||||||||| | | ||||| ||||| |||| ||||||| |||  |    
T  29655697 aatcaccatggcccgaagatgatagagcttgcactagagtagcgtagtcagactcgaagacaacacggttccatctgttcacatcagcaaagtgaatgac 29655796  T
Q  117 atcgaataaagctgttgcctccccctccaaaactgtcatatt 158  Q
    ||||| ||| |||  |||||| ||||||||||| ||||||||    
T  29655797 atcgagtaaggctactgcctctccctccaaaacagtcatatt 29655838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 17 - 158
Target Start/End: Original strand, 32577079 - 32577220
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 116  Q
    |||||||||| ||||  |||||| || ||| |||| |||||||  |||||||||||||||||||||||  |||| ||||  |||| ||||||||||||||    
T  32577079 aatcaccatgtcccgctgacgattgagcttgcactagagtagcagagtcagactcgaagacaacccagtcccatatgtttacatcagcaaagtaaatagc 32577178  T
Q  117 atcgaataaagctgttgcctccccctccaaaactgtcatatt 158  Q
    | ||| ||| |||  | |||||||||||||||| ||||||||    
T  32577179 agcgagtaaggctagtacctccccctccaaaacagtcatatt 32577220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 43840337 - 43840501
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 116  Q
    ||||||||||| ||| |||||||||| ||| || | |||||||| ||||  |||||||||||| || |   ||||||||| |||| ||||||| ||| ||    
T  43840337 aatcaccatggtccgaagacgatagagcttgcattagagtagctgagtcgaactcgaagacaaaccggtctcatttgttcacatcagcaaagtgaatggc 43840436  T
Q  117 atcgaataaa-gctgttgcctccccctccaaaactgtcata-ttgtccactgccatttcatttga 179  Q
    ||||| |||| | ||||| |||||||||||| ||||||||| |||||| |||||||||| |||||    
T  43840437 atcgagtaaaggttgttgtctccccctccaacactgtcatatttgtccgctgccatttcgtttga 43840501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 17 - 158
Target Start/End: Complemental strand, 56065785 - 56065644
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 116  Q
    ||||||||||| | ||||| |||||  ||| |||| |||||||| |||| |||||||||||||||| |  |||| | ||| || | ||||||| ||| ||    
T  56065785 aatcaccatggtctggagatgatagcgcttgcactagagtagctgagtcggactcgaagacaacccggtcccatatattcccaacagcaaagtgaatggc 56065686  T
Q  117 atcgaataaagctgttgcctccccctccaaaactgtcatatt 158  Q
    ||||| ||| ||   |||||||||||||||||||||||||||    
T  56065685 atcgagtaaggcaactgcctccccctccaaaactgtcatatt 56065644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 180
Target Start/End: Complemental strand, 49951469 - 49951305
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 116  Q
    |||||||| |||||| ||| |||| | ||| |||| ||||||   |||| |||||||||||||| | | ||||| ||||| |||| ||||||| ||  ||    
T  49951469 aatcaccacggcccgaagatgataaagcttgcactagagtagacgagtcggactcgaagacaactcggttccatctgttcgcatcagcaaagtgaagggc 49951370  T
Q  117 atcgaataaagctgttgcctccccctccaaaactgtcata-ttgtccactgccatttcatttgag 180  Q
     |||| ||| |||  ||||||||||||||| ||||||||| ||| || |||||||||| ||||||    
T  49951369 ctcgagtaaggctactgcctccccctccaatactgtcatatttgcccgctgccatttcgtttgag 49951305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 158
Target Start/End: Complemental strand, 28426341 - 28426198
Alignment:
Q  15 taaatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaata 114  Q
    ||||| |||||| ||||  ||||||||| ||  |||| ||||| |  ||||||||| ||||||||||| |  |||| ||||  |||| ||||||| ||||    
T  28426341 taaattaccatgtcccgctgacgatagagctggcactagagtatcagagtcagacttgaagacaacccggtcccatctgtttacatcagcaaagtgaata 28426242  T
Q  115 gcatcgaataaagctgttgcctccccctccaaaactgtcatatt 158  Q
    ||| ||| ||| |||  |||||||||||||||||| ||||||||    
T  28426241 gcagcgagtaaggctactgcctccccctccaaaacagtcatatt 28426198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 158
Target Start/End: Original strand, 49119429 - 49119572
Alignment:
Q  15 taaatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaata 114  Q
    ||||| |||||| ||||  ||||||||| ||  |||| ||||| |  ||||||||| ||||||||||| |  |||| ||||  |||| ||||||| ||||    
T  49119429 taaattaccatgtcccgctgacgatagagctggcactagagtatcagagtcagacttgaagacaacccggtcccatctgtttacatcagcaaagtgaata 49119528  T
Q  115 gcatcgaataaagctgttgcctccccctccaaaactgtcatatt 158  Q
    ||| ||| ||| |||  |||||||||||||||||| ||||||||    
T  49119529 gcagcgagtaaggctactgcctccccctccaaaacagtcatatt 49119572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 146
Target Start/End: Original strand, 26422633 - 26422762
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagat-ccatttgttctcatctgcaaagtaaatag 115  Q
    |||||| ||| ||||  ||||||||| ||| |||| ||||| |  ||||||||||||||||||||| ||| |||| ||||  |||| |||||||||||||    
T  26422633 aatcactatgtcccgctgacgatagagcttgcactagagtatcagagtcagactcgaagacaaccc-gatcccatctgtttacatcagcaaagtaaatag 26422731  T
Q  116 catcgaataaagctgttgcctccccctccaa 146  Q
    |||||| ||| |||  |||||||| ||||||    
T  26422732 catcgagtaaggctactgcctccctctccaa 26422762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 158
Target Start/End: Complemental strand, 2065009 - 2064868
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 116  Q
    |||||||||| || |||||||||||| |||   || |||||| | |||| ||||| ||||||||||   ||||| |||||||||| ||||||| ||  ||    
T  2065009 aatcaccatgacctggagacgatagagcttgggctagagtagatgagtccgactcaaagacaacccgactccatctgttctcatcagcaaagtgaagggc 2064910  T
Q  117 atcgaataaagctgttgcctccccctccaaaactgtcatatt 158  Q
     |||| ||| |||  ||||||||||| ||| |||||||||||    
T  2064909 gtcgagtaaggctactgcctcccccttcaatactgtcatatt 2064868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 158
Target Start/End: Original strand, 51735003 - 51735143
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 116  Q
    ||||||||||| || ||||||||||| ||| |||| ||||||   || | |||||||||||||| | |  | || | ||| |||| ||||||| ||| ||    
T  51735003 aatcaccatggtccagagacgatagagcttgcactagagtagaggagcctgactcgaagacaactc-gtcctatctattcacatcagcaaagtgaatggc 51735101  T
Q  117 atcgaataaagctgttgcctccccctccaaaactgtcatatt 158  Q
    ||||| ||| |||  |||||||||||||||||||||||||||    
T  51735102 atcgagtaaggctactgcctccccctccaaaactgtcatatt 51735143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 51259560 - 51259624
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacc 81  Q
    ||||||||||||||| |||||||||  ||| |||| |||||||| |||| |||||||||||||||    
T  51259560 aatcaccatggcccgaagacgatagcgcttgcactagagtagctgagtcggactcgaagacaacc 51259624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 28537802 - 28537980
Alignment:
Q  1 atagcacagatttttaaatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcat 100  Q
    |||||| ||| |||| |||||||||||||| ||||||||||| ||| ||||  ||||| | |||| |||| ||| ||||||| |  |||| ||||| |||    
T  28537802 atagcatagaattttgaatcaccatggcccagagacgatagagcttgcactaaagtagatgagtcggacttgaacacaacccggtcccatctgttcgcat 28537901  T
Q  101 ctgcaaagtaaatagcatcgaataaagctgttgcctccccctccaaaactgtcatattgt-ccactgccatttcatttgag 180  Q
    |  |||||| ||  || |||| ||| |||  ||||||||||||  ||||| ||||||| | || |||||||||| ||||||    
T  28537902 caacaaagtgaagggcctcgagtaaggctactgcctccccctc--aaactatcatattttcccgctgccatttcgtttgag 28537980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 158
Target Start/End: Complemental strand, 55735165 - 55735024
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 116  Q
    ||||||||||| ||| |||||||||| ||| |||| |||||| | | || |||||||| | ||||| | ||||| ||||| || |  |||||| ||  ||    
T  55735165 aatcaccatggtccgaagacgatagagcttgcactagagtagatgaatcggactcgaaaataacccggttccatgtgttcgcaacaacaaagtgaagggc 55735066  T
Q  117 atcgaataaagctgttgcctccccctccaaaactgtcatatt 158  Q
     |||| ||| |||  ||||||||||||||| |||||||||||    
T  55735065 ctcgagtaaggctactgcctccccctccaatactgtcatatt 55735024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 158
Target Start/End: Complemental strand, 21321685 - 21321542
Alignment:
Q  17 aatcaccatggcccggagacgatagacc--ttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaata 114  Q
    |||||||||| ||| ||||| ||||| |  || |||| |||||| | |||| |||||||||||||||| |  |||| ||||  |||| | ||||| ||      
T  21321685 aatcaccatgaccctgagacaatagagcaattgcactagagtagatgagtcggactcgaagacaacccggtcccatctgttagcatcagaaaagtgaagg 21321586  T
Q  115 gcatcgaataaagctgttgcctccccctccaaaactgtcatatt 158  Q
    || |||| ||| ||| ||| ||||||||||||||||||||||||    
T  21321585 gcctcgagtaaggctattgtctccccctccaaaactgtcatatt 21321542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 4e-25; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 15 - 158
Target Start/End: Complemental strand, 7127381 - 7127238
Alignment:
Q  15 taaatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaata 114  Q
    |||||||||||||||||||||||| ||| ||| ||||  ||||||  |||||||||||||| |||||| |  |||| ||||| |||| ||||||| ||||    
T  7127381 taaatcaccatggcccggagacgaaagagcttgcactaaagtagcatagtcagactcgaaggcaacccggtcccatctgttcacatcagcaaagtgaata 7127282  T
Q  115 gcatcgaataaagctgttgcctccccctccaaaactgtcatatt 158  Q
    ||||||| ||| |||  | ||||||||||||||||| |||||||    
T  7127281 gcatcgagtaaggctactacctccccctccaaaactttcatatt 7127238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 17 - 158
Target Start/End: Original strand, 478087 - 478228
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 116  Q
    |||||||||  ||||||||||||||| ||| |||| ||||||   ||||||| ||||||| ||||| |  |||| | ||| |||  ||||||| ||| ||    
T  478087 aatcaccataacccggagacgatagagcttgcactagagtagtagagtcagattcgaagataacccggtcccatctattcacattagcaaagtgaatggc 478186  T
Q  117 atcgaataaagctgttgcctccccctccaaaactgtcatatt 158  Q
    ||||| ||| |||  |||||||||||||||||||||||||||    
T  478187 atcgagtaaggctactgcctccccctccaaaactgtcatatt 478228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 17 - 158
Target Start/End: Original strand, 8451154 - 8451295
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 116  Q
    |||||||||| || |||||||||| | ||| ||||  ||||| | ||||||||||||||||||||| |  ||||  |||| |||| || |||| ||| |     
T  8451154 aatcaccatgacctggagacgataaagcttgcactaaagtagatgagtcagactcgaagacaacccggtcccatccgttcacatcagcgaagtgaatgga 8451253  T
Q  117 atcgaataaagctgttgcctccccctccaaaactgtcatatt 158  Q
    ||||| |||||||  ||||||||||||||| |||||||||||    
T  8451254 atcgagtaaagctactgcctccccctccaacactgtcatatt 8451295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 158
Target Start/End: Original strand, 185622 - 185762
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 116  Q
    ||||||||||| |||||||||| ||| ||| ||||  ||||||  ||||||||||| ||||||||| | ||||| | ||| ||||  |||||| |||||     
T  185622 aatcaccatggtccggagacgaaagagcttgcactaaagtagcagagtcagactcgtagacaacccggttccatctattcacatcaacaaagtgaatagt 185721  T
Q  117 atcgaataaagctgttgcctccccctccaaaactgtcatatt 158  Q
    ||||| ||| |||  | ||| |||||||||||||||||||||    
T  185722 atcgagtaaggctacttcct-cccctccaaaactgtcatatt 185762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 158
Target Start/End: Complemental strand, 23854088 - 23853947
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 116  Q
    |||||||||||||||||||||||||| ||| |||| |||| | | |||| |||||||||||||| |||   ||| ||||  ||||  |||||| ||| ||    
T  23854088 aatcaccatggcccggagacgatagagcttgcactagagttgatgagtcggactcgaagacaactcagtctcatctgttagcatcaacaaagtgaatggc 23853989  T
Q  117 atcgaataaagctgttgcctccccctccaaaactgtcatatt 158  Q
     || | ||| |||  |||||| ||||||||||||||||||||    
T  23853988 ctcaagtaaggctactgcctcaccctccaaaactgtcatatt 23853947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 598268 - 598333
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaaccc 82  Q
    |||||||||| || | |||||||||| ||| |||| ||||||||||||| |||| |||||||||||    
T  598268 aatcaccatgacctgaagacgatagagcttgcactagagtagctaagtccgacttgaagacaaccc 598333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 13415064 - 13415015
Alignment:
Q  132 tgcctccccctccaaaactgtcata-ttgtccactgccatttcatttgag 180  Q
    ||||||||||||||||||||||||| |||||| |||||||||| ||||||    
T  13415064 tgcctccccctccaaaactgtcatatttgtccgctgccatttcgtttgag 13415015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 6e-24; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 17 - 158
Target Start/End: Complemental strand, 8388242 - 8388101
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 116  Q
    ||||||||||||| |||||||||||  ||| |||| |||||||| |||| |||||||||||||||| |  |||| ||||| || | ||||||| ||| ||    
T  8388242 aatcaccatggcctggagacgatagcgcttgcactagagtagctgagtcggactcgaagacaacccggtcccatctgttcccaaccgcaaagtgaatggc 8388143  T
Q  117 atcgaataaagctgttgcctccccctccaaaactgtcatatt 158  Q
    ||||| ||| ||   |||||||||||||||||||||||||||    
T  8388142 atcgagtaaggcaactgcctccccctccaaaactgtcatatt 8388101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 17 - 180
Target Start/End: Complemental strand, 25730964 - 25730800
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 116  Q
    |||||||||| ||| ||||||||||| ||| |||| |||||| | |||| |||||||||||||| |||  |||| ||||| |||| ||||||| ||  ||    
T  25730964 aatcaccatgaccctgagacgatagagcttgcactagagtagatgagtcggactcgaagacaactcagtcccatctgttcgcatcagcaaagtgaagggc 25730865  T
Q  117 atcgaataaagctgttgcctccccctccaaaactgtcata-ttgtccactgccatttcatttgag 180  Q
     |||| ||| |||  ||||||||||||||||||||||||| ||| || |||||||||| ||||||    
T  25730864 ctcgagtaaggctactgcctccccctccaaaactgtcatatttgcccgctgccatttcgtttgag 25730800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 17 - 158
Target Start/End: Original strand, 26597488 - 26597629
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 116  Q
    |||||||||||||||||||||||||  ||| |||| |||||||| |||| |||||||||||||||| |   ||| | ||| || ||||||||| ||| ||    
T  26597488 aatcaccatggcccggagacgatagcgcttgcactagagtagctgagtcggactcgaagacaacccggtctcatctattcccaactgcaaagtgaatggc 26597587  T
Q  117 atcgaataaagctgttgcctccccctccaaaactgtcatatt 158  Q
    ||||| ||| ||   ||||||||||||||||| |||||||||    
T  26597588 atcgagtaaggcaactgcctccccctccaaaattgtcatatt 26597629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 17 - 180
Target Start/End: Original strand, 15988780 - 15988944
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 116  Q
    ||||||||||||| | ||||||||||  || |||| |||||||| || | |||| ||||||||||| |  |||| ||||| |||| ||||||||||  ||    
T  15988780 aatcaccatggcctgaagacgatagagattgcactagagtagctgagacggacttgaagacaacccggtcccatatgttcgcatcagcaaagtaaagggc 15988879  T
Q  117 atcgaataaagctgttgcctccccctccaaaactgtcata-ttgtccactgccatttcatttgag 180  Q
     |||| ||| | |  ||||||||||||||||||||||||| |||||| |||||||||| ||||||    
T  15988880 ctcgagtaaggttactgcctccccctccaaaactgtcatatttgtccgctgccatttcgtttgag 15988944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 20205127 - 20204970
Alignment:
Q  1 atagcacagatttttaaatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcat 100  Q
    |||||| ||| |||| |||||||||| |||||||| |||||| ||| |||| |||||| | |||| |||||||||||||| | | ||||| ||||| ||     
T  20205127 atagcatagaattttgaatcaccatgacccggagaggatagagcttgcactagagtagatgagtcggactcgaagacaactcggttccatctgttcgcaa 20205028  T
Q  101 ctgcaaagtaaatagcatcgaataaagctgttgcctccccctccaaaactgtcatatt 158  Q
    |  |||||| ||| || |||| ||| |||  ||||||||||||||| |||||||||||    
T  20205027 caacaaagtgaatggcctcgagtaaggctactgcctccccctccaatactgtcatatt 20204970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 17 - 158
Target Start/End: Original strand, 27532937 - 27533078
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 116  Q
    |||||||||| ||||||||||||| |   | ||||  || ||| ||||| |||||||| ||||||| |  |||| | ||| |||| ||||||| |||  |    
T  27532937 aatcaccatgacccggagacgataaagtctgcactaaagaagcaaagtcggactcgaaaacaacccggtcccatctattcacatcagcaaagtgaatgac 27533036  T
Q  117 atcgaataaagctgttgcctccccctccaaaactgtcatatt 158  Q
    ||||||||||||| |||||||||||||||||||||| |||||    
T  27533037 atcgaataaagctattgcctccccctccaaaactgttatatt 27533078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 158
Target Start/End: Complemental strand, 4268255 - 4268114
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 116  Q
    ||||||||||||||||||| |||||| ||| |||| |||||| | |||| |||||||||| ||||| |  |||  ||||  |||| ||||||| ||  ||    
T  4268255 aatcaccatggcccggagatgatagagcttgcactagagtagatgagtcggactcgaagaaaacccggtcccacctgttagcatcagcaaagtgaagggc 4268156  T
Q  117 atcgaataaagctgttgcctccccctccaaaactgtcatatt 158  Q
     || | ||| |||  |||||||||||||||||||||||||||    
T  4268155 ctctagtaaggctactgcctccccctccaaaactgtcatatt 4268114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 158
Target Start/End: Original strand, 22767292 - 22767429
Alignment:
Q  21 accatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagcatcg 120  Q
    |||||| ||||  ||||||||| ||| |||| ||||| |  ||||| ||||||||||||||| |  |||| ||||  |||| ||||||| ||||||| ||    
T  22767292 accatgtcccgctgacgatagagcttgcactagagtatcagagtcaaactcgaagacaacccggtcccatctgtttacatcagcaaagtgaatagcagcg 22767391  T
Q  121 aataaagctgttgcctccccctccaaaactgtcatatt 158  Q
    | ||| |||  |||||||||||||||||| ||||||||    
T  22767392 agtaaggctactgcctccccctccaaaacagtcatatt 22767429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 158
Target Start/End: Original strand, 41940768 - 41940908
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 116  Q
    |||||| |||| || |||||||||||  || |||| |||||| | |||| |||||||||||||||| | |||| |||||| |||  ||||||| |||  |    
T  41940768 aatcacaatggtccagagacgatagagtttgcactagagtagttgagtcggactcgaagacaaccc-ggtccagttgttcacatgagcaaagtgaatgac 41940866  T
Q  117 atcgaataaagctgttgcctccccctccaaaactgtcatatt 158  Q
    || || ||| ||| ||| ||||||||||||||||||||||||    
T  41940867 attgagtaaggctattgtctccccctccaaaactgtcatatt 41940908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 149
Target Start/End: Complemental strand, 27292591 - 27292458
Alignment:
Q  16 aaatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatag 115  Q
    |||||||||||||| ||||||||||||  || |||| ||| || | ||||  ||||||||||||||| |  |||| |||| ||||| ||||||| ||  |    
T  27292591 aaatcaccatggcctggagacgatagagtttgcactagagcagatgagtcgaactcgaagacaacccggtcccatctgttatcatcagcaaagtgaaggg 27292492  T
Q  116 catcgaataaagctgttgcctccccctccaaaac 149  Q
    |||| | ||| ||| |||||||||||| ||||||    
T  27292491 catctagtaaggctattgcctcccccttcaaaac 27292458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 180
Target Start/End: Complemental strand, 12660472 - 12660308
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 116  Q
    ||||||| ||||||| |||||||||| ||| |||| |||||||| |||||||||||| || ||| | |   ||||||||| |||  ||||||| |||  |    
T  12660472 aatcaccgtggcccgaagacgatagagcttgcactagagtagctgagtcagactcgacgataacacggtctcatttgttcacattagcaaagtgaatgac 12660373  T
Q  117 atcgaataaagctgttgcctccccctccaaaactgtcata-ttgtccactgccatttcatttgag 180  Q
    ||||| |||  ||  |||||||| ||| || ||||||||| ||| || |||||||||| ||||||    
T  12660372 atcgagtaagactactgcctcccgctctaacactgtcatatttgcccgctgccatttcgtttgag 12660308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 158
Target Start/End: Original strand, 11375544 - 11375685
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 116  Q
    ||||||||||| |||||||||||||| ||| |||| || ||| | | |||||||| |||||||||| |  |||| | ||  |||| ||||| | ||  ||    
T  11375544 aatcaccatggaccggagacgatagagcttgcactagaatagatgaatcagactcaaagacaacccggtcccatatatttgcatccgcaaaatgaagggc 11375643  T
Q  117 atcgaataaagctgttgcctccccctccaaaactgtcatatt 158  Q
     |||| ||| |||  || ||||||||||||||||||||||||    
T  11375644 ctcgagtaaggctactgtctccccctccaaaactgtcatatt 11375685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 158
Target Start/End: Original strand, 34652285 - 34652426
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagat-ccatttgttctcatctgcaaagtaaatag 115  Q
    |||||||||||||| |||||| |||| ||| |||| ||||||   |||| | |||||||||||||| ||| |||| ||||| |||| ||||||| ||| |    
T  34652285 aatcaccatggcccagagacggtagagcttgcactagagtagtcgagtcgggctcgaagacaaccc-gatcccatctgttcacatcggcaaagtgaatgg 34652383  T
Q  116 catcgaataaagctgttgcctccccctccaaaactgtcatatt 158  Q
    |||||| ||| | | ||  |||||| | ||| |||||||||||    
T  34652384 catcgagtaaggttattatctccccttacaacactgtcatatt 34652426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 32632671 - 32632606
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaaccc 82  Q
    |||||| ||||| ||||||||||| | ||||||||  ||||| | |||||||||| ||||||||||    
T  32632671 aatcactatggctcggagacgataaagcttacactaaagtagatgagtcagactcaaagacaaccc 32632606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 9e-23; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 19 - 158
Target Start/End: Original strand, 30802024 - 30802163
Alignment:
Q  19 tcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagcat 118  Q
    |||||||||| |||| |||||||| ||| ||||  ||||||| | || ||||||||||||||| ||  |||||| ||| |||||||||||||||| ||||    
T  30802024 tcaccatggctcggaaacgatagagcttgcactaaagtagctgaatcggactcgaagacaacctagtcccattttttcacatctgcaaagtaaatggcat 30802123  T
Q  119 cgaataaagctgttgcctccccctccaaaactgtcatatt 158  Q
    | | ||| |||  |||||||||| ||||||||||||||||    
T  30802124 ctagtaaggctactgcctcccccaccaaaactgtcatatt 30802163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 17 - 155
Target Start/End: Original strand, 15606025 - 15606163
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 116  Q
    |||||||||| ||  ||||||||||| ||| |||| |||||||| |||| |||| ||||||||||| |  |||||||||| ||||  |||||| ||| ||    
T  15606025 aatcaccatgacctagagacgatagagcttgcactagagtagctgagtcggacttgaagacaacccggtcccatttgttcccatcaacaaagtgaatggc 15606124  T
Q  117 atcgaataaagctgttgcctccccctccaaaactgtcat 155  Q
    ||||| ||| |||  ||||||||||||||||||||||||    
T  15606125 atcgagtaaggctactgcctccccctccaaaactgtcat 15606163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 17 - 180
Target Start/End: Complemental strand, 28107295 - 28107131
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagat-ccatttgttctcatctgcaaagtaaatag 115  Q
    |||||||||||||||||||||||||| ||| |||| |||||||  ||| |||||||||||||| |  ||| |||| | |||  || |||||||| ||| |    
T  28107295 aatcaccatggcccggagacgatagagcttgcactagagtagcggagttagactcgaagacaa-cgtgatcccatctattcatatttgcaaagtgaatgg 28107197  T
Q  116 catcgaataaagctgttgcctccccctccaaaactgtcatat-tgtccactgccatttcatttgag 180  Q
    |||| | ||| |||  |||||||||||||||||||||||||| ||||| |||||||||| ||||||    
T  28107196 catcaagtaaggctactgcctccccctccaaaactgtcatatctgtccgctgccatttcgtttgag 28107131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 19690909 - 19691051
Alignment:
Q  16 aaatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatag 115  Q
    ||||||||||| | | ||||||||||| ||| ||||  ||||||| ||||||||||||||||||| | |   ||| ||||| |||| ||||||| |||      
T  19690909 aaatcaccatgactcagagacgatagagcttgcactaaagtagctgagtcagactcgaagacaactcggtcacatctgttcacatcagcaaagtgaatga 19691008  T
Q  116 catcgaataaagctgttgcctccccctccaaaactgtcatatt 158  Q
    |||||||||| ||| |||||||||| |||||||| ||||||||    
T  19691009 catcgaataaggctattgcctccccttccaaaacggtcatatt 19691051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 158
Target Start/End: Original strand, 15053206 - 15053347
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 116  Q
    ||||||||||||||| |||||||||   || |||| |||||||| |||| |||||||||||||||  |   ||||| ||| | || |||| |  ||| ||    
T  15053206 aatcaccatggcccgaagacgatagcgtttgcactagagtagctgagtcggactcgaagacaaccttgtctcattttttcacgtcagcaaggcgaatggc 15053305  T
Q  117 atcgaataaagctgttgcctccccctccaaaactgtcatatt 158  Q
    ||||| ||| |||  ||||||||||||||| ||| |||||||    
T  15053306 atcgagtaaggctactgcctccccctccaacactatcatatt 15053347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 14680334 - 14680154
Alignment:
Q  1 atagcacagatttttaaatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcat 100  Q
    |||||| ||| |||| ||||||||  ||||||||| |||||| ||| || | ||||||   |||| || || |||||||| | | ||||| ||||  |||    
T  14680334 atagcagagaattttgaatcaccactgcccggagatgatagagcttgcaatagagtagacgagtcggaatcaaagacaactcggttccatctgtttgcat 14680235  T
Q  101 ctgcaaagtaaatagcatcgaataaagctgttgcctccccctccaaaactgtcatattgt-ccactgccatttcatttgag 180  Q
    | ||| ||| ||  || |||| ||| |||  ||||||||||||||| ||||||||||| | || |||||||||||||||||    
T  14680234 cagcagagtgaagggcctcgagtaaggctactgcctccccctccaatactgtcatattttcccgctgccatttcatttgag 14680154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 29368201 - 29368251
Alignment:
Q  131 ttgcctccccctccaaaactgtcata-ttgtccactgccatttcatttgag 180  Q
    |||||||||||||||||||||||||| || ||| |||||||||| ||||||    
T  29368201 ttgcctccccctccaaaactgtcatatttatccgctgccatttcttttgag 29368251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 17 - 172
Target Start/End: Complemental strand, 44527409 - 44527253
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 116  Q
    ||||||||||||||||||| |||||| ||| |||  |||||| | |||| |||||||||||||||| |  |||| ||||  |||| ||||||| ||  ||    
T  44527409 aatcaccatggcccggagatgatagagcttgcacaagagtagatgagtcggactcgaagacaacccggtcccatctgttagcatcagcaaagtgaagggc 44527310  T
Q  117 atcgaataaagctgttgcctccccctccaaaactgtcata-ttgtccactgccattt 172  Q
     || | ||| |||  ||||||||||||||||||||||||| |||||| |||||||||    
T  44527309 ctctagtaaggctactgcctccccctccaaaactgtcatatttgtccgctgccattt 44527253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 15 - 158
Target Start/End: Complemental strand, 25682809 - 25682666
Alignment:
Q  15 taaatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaata 114  Q
    ||||||||  |||||||||||||||||| |||  ||| |||||||| ||||| ||||||||||| ||| |  |||| ||||| |||  ||||||| |||     
T  25682809 taaatcactgtggcccggagacgatagagcttgtactagagtagctgagtcaaactcgaagacagcccggtcccatctgttcacattagcaaagtgaatg 25682710  T
Q  115 gcatcgaataaagctgttgcctccccctccaaaactgtcatatt 158  Q
     |||||| ||| |||  ||||||||||||||| |||||||||||    
T  25682709 acatcgagtaaggctactgcctccccctccaacactgtcatatt 25682666  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 17 - 158
Target Start/End: Complemental strand, 36733852 - 36733711
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 116  Q
    ||||| |||||||||||||||||| | ||| |||| ||||     ||||||||||||||||||||| |  |||||||||| |||| ||||||| |||| |    
T  36733852 aatcatcatggcccggagacgatatagcttgcactagagttatagagtcagactcgaagacaacccggtcccatttgttcacatcagcaaagtgaataac 36733753  T
Q  117 atcgaataaagctgttgcctccccctccaaaactgtcatatt 158  Q
    || || |||  ||  |||||||||||||||||||| ||||||    
T  36733752 attgagtaagactactgcctccccctccaaaactgccatatt 36733711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 17 - 158
Target Start/End: Original strand, 48949755 - 48949896
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 116  Q
    |||||||||||||||||||||||||  ||| |||| |||||||| |||   ||||||||||||||| |  |||| ||||| || |  |||||| ||| ||    
T  48949755 aatcaccatggcccggagacgatagcgcttgcactagagtagctgagttgaactcgaagacaacccggtcccatctgttcccaacaacaaagtgaatcgc 48949854  T
Q  117 atcgaataaagctgttgcctccccctccaaaactgtcatatt 158  Q
    ||||| ||| ||   ||||||||||||||||||| |||||||    
T  48949855 atcgagtaaggcaactgcctccccctccaaaactttcatatt 48949896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 44602924 - 44602767
Alignment:
Q  1 atagcacagatttttaaatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcat 100  Q
    |||||| ||| |||| ||||||||||||||||||| |||||| ||| |||| |||||||  ||| |||||||||| |||||| |   ||| ||||| |||    
T  44602924 atagcatagaattttgaatcaccatggcccggagatgatagagcttgcactagagtagcggagttagactcgaaggcaacccggtctcatctgttcacat 44602825  T
Q  101 ctgcaaagtaaatagcatcgaataaagctgttgcctccccctccaaaactgtcatatt 158  Q
    | | ||||| |||  |||||| |||  ||  || |||||||||||||| |||||||||    
T  44602824 cagtaaagtgaatgacatcgagtaagactaatgtctccccctccaaaattgtcatatt 44602767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 158
Target Start/End: Complemental strand, 51113471 - 51113330
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 116  Q
    |||||||||||||| ||||||||||  ||| |||| |||||||| |||| |||||||||||||||| |  |||| ||||| || |  |||||| |||  |    
T  51113471 aatcaccatggcccagagacgatagcgcttgcactagagtagctgagtcggactcgaagacaacccggtcccatctgttcccaacaacaaagtgaatgac 51113372  T
Q  117 atcgaataaagctgttgcctccccctccaaaactgtcatatt 158  Q
    ||||| ||| ||   |||||||||||||||||| || |||||    
T  51113371 atcgagtaaggcaactgcctccccctccaaaacggttatatt 51113330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 2885379 - 2885314
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaaccc 82  Q
    ||||||||| ||||| |||||||||| ||| |||| |||||||| |||| ||||||||||||||||    
T  2885379 aatcaccatagcccgaagacgatagagcttgcactagagtagctgagtctgactcgaagacaaccc 2885314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 180
Target Start/End: Complemental strand, 48166357 - 48166229
Alignment:
Q  53 gagtagctaagtcagactcgaagacaacccagatcc-atttgttctcatctgcaaagtaaatagcatcgaataaagctgttgcctccccctccaaaactg 151  Q
    |||||||| | ||||||||||||||||||| ||||| || | ||| |||  ||||||| |||  |||||| ||| ||| ||| ||||| |||||||||||    
T  48166357 gagtagctgaatcagactcgaagacaaccc-gatcccatatattcacataagcaaagtgaatgacatcgagtaaggctattgtctcccactccaaaactg 48166259  T
Q  152 tcata-ttgtccactgccatttcatttgag 180  Q
    ||||| |||  | |||||||||||||||||    
T  48166258 tcatatttgctcgctgccatttcatttgag 48166229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 8e-17; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 32 - 180
Target Start/End: Complemental strand, 88700 - 88551
Alignment:
Q  32 gagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagcatcgaataaagctgt 131  Q
    ||||||||||| ||| |||| |||||| | |||| |||||||||||||||| |  |||| ||||  ||||  |||||| ||  || |||| ||| |||      
T  88700 gagacgatagagcttgcactagagtagatgagtcggactcgaagacaacccggtcccatctgttagcatcaacaaagtgaagggcctcgagtaaggctac 88601  T
Q  132 tgcctccccctccaaaactgtcata-ttgtccactgccatttcatttgag 180  Q
    ||||||||||||||||||||||||| ||| ||| ||||||||||||||||    
T  88600 tgcctccccctccaaaactgtcatatttgcccattgccatttcatttgag 88551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 158
Target Start/End: Original strand, 34695935 - 34696076
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 116  Q
    |||||||||| |||||||||||||   ||| |||| |||||||  |||| ||||||||||||||||    |||| | ||  |||| ||||||| ||| ||    
T  34695935 aatcaccatgacccggagacgataacgcttgcactagagtagcggagtcggactcgaagacaacccgttcccatctattgacatcagcaaagtgaatggc 34696034  T
Q  117 atcgaataaagctgttgcctccccctccaaaactgtcatatt 158  Q
     | || ||| |||  |||||||||||||||||||||||||||    
T  34696035 cttgagtaaggctactgcctccccctccaaaactgtcatatt 34696076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 158
Target Start/End: Original strand, 34718347 - 34718488
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 116  Q
    |||||||||| |||||||||||||   ||| |||| |||||||  |||| ||||||||||||||||    |||| | ||  |||| ||||||| ||| ||    
T  34718347 aatcaccatgacccggagacgataacgcttgcactagagtagcggagtcggactcgaagacaacccgttcccatctattgacatcagcaaagtgaatggc 34718446  T
Q  117 atcgaataaagctgttgcctccccctccaaaactgtcatatt 158  Q
     | || ||| |||  |||||||||||||||||||||||||||    
T  34718447 cttgagtaaggctactgcctccccctccaaaactgtcatatt 34718488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 13109899 - 13109964
Alignment:
Q  16 aaatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacc 81  Q
    |||||||||||||||| |||||||||| ||| |||| ||||||   |||| |||||||||||||||    
T  13109899 aaatcaccatggcccgaagacgatagagcttccactagagtagaagagtcggactcgaagacaacc 13109964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 9710107 - 9710046
Alignment:
Q  21 accatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaaccc 82  Q
    |||||| ||||  ||||||||| ||| |||| ||||| | ||||||||||||||||||||||    
T  9710107 accatgtcccgctgacgatagagcttgcactagagtatcaaagtcagactcgaagacaaccc 9710046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 158
Target Start/End: Original strand, 12130669 - 12130810
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 116  Q
    |||||||||| |||| ||| |||||| |||  ||| |||||| | ||||||||||||||| |||||   ||||| | ||  |||| ||||||| || |||    
T  12130669 aatcaccatgtcccgaagatgatagagcttggactagagtagatgagtcagactcgaagataacccgattccatctatttgcatcagcaaagtgaagagc 12130768  T
Q  117 atcgaataaagctgttgcctccccctccaaaactgtcatatt 158  Q
     || | ||| |||  ||||||||||||||| ||| |||||||    
T  12130769 ctcaagtaaggctactgcctccccctccaacactatcatatt 12130810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0446 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 158
Target Start/End: Complemental strand, 342 - 201
Alignment:
Q  17 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 116  Q
    ||||||||||| | ||||| |||||  ||| |||| |||||||| |||| |||||||||||||||| |  |||| | ||| || | ||||||| ||| ||    
T  342 aatcaccatggtctggagatgatagcgcttgcactagagtagctgagtcggactcgaagacaacccggtcccatatattcccaacagcaaagtgaatggc 243  T
Q  117 atcgaataaagctgttgcctccccctccaaaactgtcatatt 158  Q
    ||||| ||| ||   ||||||||||||| |||||||||||||    
T  242 atcgagtaaggcaactgcctccccctcccaaactgtcatatt 201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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