View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14392_low_20 (Length: 488)
Name: NF14392_low_20
Description: NF14392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14392_low_20 |
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| [»] scaffold0459 (1 HSPs) |
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| [»] scaffold0366 (1 HSPs) |
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Alignment Details
Target: scaffold0459 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 269 - 474
Target Start/End: Complemental strand, 6083 - 5875
Alignment:
| Q |
269 |
gaactagagaatttaaaagagttaatcctaaaaggtgaagataaaggagaaaacaa--agat-acatttgatcctgagaagcatattgatgcatgcttgc |
365 |
Q |
| |
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||||||||| |||| ||||| || ||||||| ||||||||||||||||| ||||| ||| |||||||||| |||||| ||||||||| ||| |||| |
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| T |
6083 |
gaactagaggatttgaaagattttgtcctaaatggtgaagataaaggagacaacaataagagcacatttgatcttgagaaacatattgatacatatttgc |
5984 |
T |
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| Q |
366 |
ctgttagagtaaatgagcaaagagtgagcaatcttttacaatcactctttgttggagcatcagtctttgccatgcctgtcattaagaaaattccaacttc |
465 |
Q |
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|||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||| | |||| ||||| ||||||| ||| || | || |||||||| |
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| T |
5983 |
ctgtaagagtaaaggagcaaagagtgagcaaccttttacaatcactctttgttggagtagcagtgtttgctatgcctgccataaaaatgataccaacttc |
5884 |
T |
|
| Q |
466 |
tgttttgtg |
474 |
Q |
| |
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|||||||| |
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| T |
5883 |
agttttgtg |
5875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 269 - 474
Target Start/End: Complemental strand, 6083 - 5875
Alignment:
| Q |
269 |
gaactagagaatttaaaagagttaatcctaaaaggtgaagataaaggagaaaacaa--agat-acatttgatcctgagaagcatattgatgcatgcttgc |
365 |
Q |
| |
|
||||||||| |||| ||||| || ||||||| ||||||||||||||||| ||||| ||| |||||||||| |||||| || |||||| ||| |||| |
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| T |
6083 |
gaactagaggatttgaaagattttgtcctaaatggtgaagataaaggagacaacaataagagcacatttgatcttgagaaacacattgatacatatttgc |
5984 |
T |
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| Q |
366 |
ctgttagagtaaatgagcaaagagtgagcaatcttttacaatcactctttgttggagcatcagtctttgccatgcctgtcattaagaaaattccaacttc |
465 |
Q |
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| T |
5983 |
ctgtaagagtataggagcaaagagtgagcaaccttttacaatcactctttgttggagtagcagtgtttgctatgcctgccataaaaatgataccaacttc |
5884 |
T |
|
| Q |
466 |
tgttttgtg |
474 |
Q |
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|||||||| |
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| T |
5883 |
agttttgtg |
5875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 176
Target Start/End: Complemental strand, 38685334 - 38685296
Alignment:
| Q |
138 |
tggaagtaattgaatataaccacatgtgtcagtgtcatg |
176 |
Q |
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| T |
38685334 |
tggaagtaattgaatgtaaccacatgtgtcagtgtcatg |
38685296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 171
Target Start/End: Complemental strand, 10948799 - 10948766
Alignment:
| Q |
138 |
tggaagtaattgaatataaccacatgtgtcagtg |
171 |
Q |
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| T |
10948799 |
tggaagtaattgaatataaccacatgtgttagtg |
10948766 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 18814845 - 18814805
Alignment:
| Q |
143 |
gtaattgaatataaccacatgtgtcagtgtcatgttggtgt |
183 |
Q |
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| T |
18814845 |
gtaattgaatataaccacatgtgttagtgtcgtgttggtgt |
18814805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 181
Target Start/End: Complemental strand, 24105320 - 24105283
Alignment:
| Q |
144 |
taattgaatataaccacatgtgtcagtgtcatgttggt |
181 |
Q |
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| T |
24105320 |
taattgaatataatcaaatgtgtcagtgtcatgttggt |
24105283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 177
Target Start/End: Complemental strand, 2304092 - 2304055
Alignment:
| Q |
140 |
gaagtaattgaatataaccacatgtgtcagtgtcatgt |
177 |
Q |
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| T |
2304092 |
gaagtaattgaacataaccacatgtgtcagtatcatgt |
2304055 |
T |
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