View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14392_low_22 (Length: 463)

Name: NF14392_low_22
Description: NF14392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14392_low_22
NF14392_low_22
[»] chr3 (6 HSPs)
chr3 (18-283)||(1529261-1529526)
chr3 (282-349)||(33365925-33365993)
chr3 (234-282)||(42655869-42655917)
chr3 (231-279)||(52041307-52041355)
chr3 (238-282)||(1141840-1141884)
chr3 (231-279)||(22424293-22424341)
[»] chr2 (4 HSPs)
chr2 (282-456)||(10983054-10983228)
chr2 (196-279)||(29280184-29280267)
chr2 (231-282)||(38996443-38996494)
chr2 (282-349)||(3081203-3081271)
[»] chr4 (5 HSPs)
chr4 (281-349)||(31525509-31525578)
chr4 (196-279)||(9451341-9451424)
chr4 (209-279)||(24257803-24257873)
chr4 (241-279)||(27067973-27068011)
chr4 (282-329)||(23538245-23538293)
[»] chr1 (4 HSPs)
chr1 (282-349)||(49195465-49195533)
chr1 (282-349)||(12606643-12606711)
chr1 (282-349)||(40908316-40908384)
chr1 (282-349)||(46566569-46566637)
[»] chr5 (2 HSPs)
chr5 (282-349)||(43469612-43469680)
chr5 (282-349)||(12870155-12870223)
[»] chr7 (3 HSPs)
chr7 (282-349)||(10646115-10646183)
chr7 (176-279)||(20077210-20077313)
chr7 (286-329)||(4658704-4658748)
[»] chr6 (1 HSPs)
chr6 (231-279)||(21762121-21762169)
[»] scaffold0238 (1 HSPs)
scaffold0238 (282-350)||(5100-5169)


Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 1529526 - 1529261
Alignment:
Q  18 aagagattgtagatctgtagtgcagaatttcgagaataggtgagagtaaaagaatgtgatctataatgcattggaaaaggcaaagcaagttgttaacaga 117  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1529526 aagagattgtagatctgtagtgcagaattttgagaataggtgagagtaaaagaatgtgatctataatgcattggaaaaggcaaagcaagttgttaacaga 1529427  T
Q  118 acatacatgtagatagtggcatgggaggcacattggaaacaaagaataggtgagacgctatttaatgcaatcatccatatgccttaggtagatgcatcgg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1529426 acatacatgtagatagtggcatgggaggcacattggaaacaaagaataggtgagacgctatttaatgcaatcatccatatgccttaggtagatgcatcgg 1529327  T
Q  218 cagactcaattttttgtgggagggaaatttaaaatttgaacttagtttgatgagtaggaaaaacat 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1529326 cagactcaattttttgtgggagggaaatttaaaatttgaacttagtttgatgagtaggaaaaacat 1529261  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 282 - 349
Target Start/End: Original strand, 33365925 - 33365993
Alignment:
Q  282 atcctttattataaaagccagacttgatgagctggcagt-ttgccctaaacaatcctgattttccctcc 349  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||| ||||||||||    
T  33365925 atcctttattataaaagccagacttgatgagctggcagtgttgccctaatcactcctgtttttccctcc 33365993  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 234 - 282
Target Start/End: Complemental strand, 42655917 - 42655869
Alignment:
Q  234 tgggagggaaatttaaaatttgaacttagtttgatgagtaggaaaaaca 282  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||||    
T  42655917 tgggagggaaatttaaaaattgaacttagcttgatgagtaggaaaaaca 42655869  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 279
Target Start/End: Original strand, 52041307 - 52041355
Alignment:
Q  231 ttgtgggagggaaatttaaaatttgaacttagtttgatgagtaggaaaa 279  Q
    |||| |||||||||||||||| |||||||||| ||||||||||||||||    
T  52041307 ttgtaggagggaaatttaaaaattgaacttagcttgatgagtaggaaaa 52041355  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 282
Target Start/End: Complemental strand, 1141884 - 1141840
Alignment:
Q  238 agggaaatttaaaatttgaacttagtttgatgagtaggaaaaaca 282  Q
    |||||||||||||| ||||||| || ||| |||||||||||||||    
T  1141884 agggaaatttaaaaattgaactcagcttgttgagtaggaaaaaca 1141840  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 279
Target Start/End: Original strand, 22424293 - 22424341
Alignment:
Q  231 ttgtgggagggaaatttaaaatttgaacttagtttgatgagtaggaaaa 279  Q
    |||||||||||||||| |||| || ||||||| || |||||||||||||    
T  22424293 ttgtgggagggaaattcaaaaattcaacttagcttaatgagtaggaaaa 22424341  T

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Target: chr2 (Bit Score: 163; Significance: 7e-87; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 282 - 456
Target Start/End: Complemental strand, 10983228 - 10983054
Alignment:
Q  282 atcctttattataaaagccagacttgatgagctggcagtttgccctaaacaatcctgattttccctcctaagccgtcattaattgcaaggcttatctgcc 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  10983228 atcctttattataaaagccagacttgatgagctggcagtttgccctaatcaatcctgattttccctcctaattcgtcattaattgcaaggcttatctgcc 10983129  T
Q  382 aaccacccacttcctcttgggcgcatttattgtgacctttcatgtacatcattcaaccaatcaaatcctttgctt 456  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10983128 aaccacccacttcctcttgggcgcatttattgtgacctttcatgtacatcattcaaccaatcaaatcctttgctt 10983054  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 196 - 279
Target Start/End: Complemental strand, 29280267 - 29280184
Alignment:
Q  196 atgccttaggtagatgcatcggcagactcaattttttgtgggagggaaatttaaaatttgaacttagtttgatgagtaggaaaa 279  Q
    |||| |||| || |||||| ||||||||| ||   ||||||||||||||||||||| |||||||||| |||||||||| |||||    
T  29280267 atgcattagatacatgcattggcagactccataggttgtgggagggaaatttaaaaattgaacttagcttgatgagtacgaaaa 29280184  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 231 - 282
Target Start/End: Original strand, 38996443 - 38996494
Alignment:
Q  231 ttgtgggagggaaatttaaaatttgaacttagtttgatgagtaggaaaaaca 282  Q
    |||| ||||||||||||||||||||||||||  |||||||||||||||||||    
T  38996443 ttgtaggagggaaatttaaaatttgaacttaacttgatgagtaggaaaaaca 38996494  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 282 - 349
Target Start/End: Original strand, 3081203 - 3081271
Alignment:
Q  282 atcctttattataaaagccagacttgatgagctggcagt-ttgccctaaacaatcctgattttccctcc 349  Q
    |||||||| ||| |||||||||||||||||||||||||| ||||||||| ||  ||| |||||||||||    
T  3081203 atcctttactattaaagccagacttgatgagctggcagtgttgccctaatcatccctcattttccctcc 3081271  T

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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 281 - 349
Target Start/End: Complemental strand, 31525578 - 31525509
Alignment:
Q  281 catcctttattataaaagccagacttgatgagctggcagt-ttgccctaaacaatcctgattttccctcc 349  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||| ||||||||||    
T  31525578 catcctttattataaaagccagacttgatgagctggcagtgttgccctaatcactcctgtttttccctcc 31525509  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 196 - 279
Target Start/End: Complemental strand, 9451424 - 9451341
Alignment:
Q  196 atgccttaggtagatgcatcggcagactcaattttttgtgggagggaaatttaaaatttgaacttagtttgatgagtaggaaaa 279  Q
    |||| |||| || |||||| ||||||||| ||   ||||||||||||||||||||| |||||||||| |||||||||| |||||    
T  9451424 atgcattagatatatgcattggcagactccataggttgtgggagggaaatttaaaaattgaacttagcttgatgagtacgaaaa 9451341  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 279
Target Start/End: Complemental strand, 24257873 - 24257803
Alignment:
Q  209 atgcatcggcagactcaattttttgtgggagggaaatttaaaatttgaacttagtttgatgagtaggaaaa 279  Q
    |||||| |||||||| |||   |||||||||||| || ||||| |||||||||||||||||| ||||||||    
T  24257873 atgcattggcagactgaataggttgtgggagggagatataaaaattgaacttagtttgatgattaggaaaa 24257803  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 279
Target Start/End: Complemental strand, 27068011 - 27067973
Alignment:
Q  241 gaaatttaaaatttgaacttagtttgatgagtaggaaaa 279  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  27068011 gaaatttaaattttgaacttagcttgatgagtaggaaaa 27067973  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 329
Target Start/End: Complemental strand, 23538293 - 23538245
Alignment:
Q  282 atcctttattataaaagccagacttgatgagctggcagt-ttgccctaa 329  Q
    |||||||||||| |||| ||||||||||||||| ||||| |||||||||    
T  23538293 atcctttattattaaagtcagacttgatgagctagcagtgttgccctaa 23538245  T

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Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 282 - 349
Target Start/End: Complemental strand, 49195533 - 49195465
Alignment:
Q  282 atcctttattataaaagccagacttgatgagctggcagt-ttgccctaaacaatcctgattttccctcc 349  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||| ||||||||||    
T  49195533 atcctttattataaaagccagacttgatgagctggcagtgttgccctaatcactcctgtttttccctcc 49195465  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 282 - 349
Target Start/End: Complemental strand, 12606711 - 12606643
Alignment:
Q  282 atcctttattataaaagccagacttgatgagctggcagt-ttgccctaaacaatcctgattttccctcc 349  Q
    |||||||| |||||||||||||||||||| ||||||||| ||||||||| || |||| |||||||||||    
T  12606711 atcctttactataaaagccagacttgatgtgctggcagtgttgccctaatcactccttattttccctcc 12606643  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 282 - 349
Target Start/End: Original strand, 40908316 - 40908384
Alignment:
Q  282 atcctttattataaaagccagacttgatgagctggcagt-ttgccctaaacaatcctgattttccctcc 349  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||| ||  ||| |||||||||||    
T  40908316 atcctttactataaaagccagacttgatgagctggcagtgttgccctaatcatccctcattttccctcc 40908384  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 282 - 349
Target Start/End: Original strand, 46566569 - 46566637
Alignment:
Q  282 atcctttattataaaagccagacttgatgagctggcagt-ttgccctaaacaatcctgattttccctcc 349  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||| || | || |||||||||||    
T  46566569 atcctttattataaaagccagatttgatgagctggcagtgttgccctaatcacttcttattttccctcc 46566637  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 282 - 349
Target Start/End: Complemental strand, 43469680 - 43469612
Alignment:
Q  282 atcctttattataaaagccagacttgatgagctggcagt-ttgccctaaacaatcctgattttccctcc 349  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| || | || |||||||||||    
T  43469680 atcctttattataaaagccagacttgatgagctggcagtgttgccctaatcacttcttattttccctcc 43469612  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 282 - 349
Target Start/End: Original strand, 12870155 - 12870223
Alignment:
Q  282 atcctttattataaaagccagacttgatgagctggcagt-ttgccctaaacaatcctgattttccctcc 349  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||| || | ||| ||||||||||    
T  12870155 atcctttactataaaagccagacttgatgagctggcagtgttgccctaatcacttctgtttttccctcc 12870223  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 282 - 349
Target Start/End: Complemental strand, 10646183 - 10646115
Alignment:
Q  282 atcctttattataaaagccagacttgatgagctggcagt-ttgccctaaacaatcctgattttccctcc 349  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||| || | || |||||||||||    
T  10646183 atcctttattctaaaagccagacttgatgagctggcagtgttgccctaatcacttcttattttccctcc 10646115  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 279
Target Start/End: Original strand, 20077210 - 20077313
Alignment:
Q  176 tatttaatgcaatcatccatatgccttaggtagatgcatcggcagactcaattttttgtgggagggaaatttaaaatttgaacttagtttgatgagtagg 275  Q
    |||| ||||| |||||||||||||||||| || |||||||  || |||| | || || |||||| |||||||| ||||||||| ||   |||||| ||||    
T  20077210 tattaaatgccatcatccatatgccttagatacatgcatccacaaactctaattgttatgggagcgaaatttagaatttgaacctaaagtgatgattagg 20077309  T
Q  276 aaaa 279  Q
    ||||    
T  20077310 aaaa 20077313  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 329
Target Start/End: Complemental strand, 4658748 - 4658704
Alignment:
Q  286 tttattataaaagccagacttgatgagctggca-gtttgccctaa 329  Q
    |||||||||||||| |||||||||||||| ||| |||||||||||    
T  4658748 tttattataaaagctagacttgatgagctagcatgtttgccctaa 4658704  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 231 - 279
Target Start/End: Complemental strand, 21762169 - 21762121
Alignment:
Q  231 ttgtgggagggaaatttaaaatttgaacttagtttgatgagtaggaaaa 279  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  21762169 ttgtgggagggaaatttaaaaattgaacttagcttgatgagtaggaaaa 21762121  T

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Target: scaffold0238 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 5100 - 5169
Alignment:
Q  282 atcctttattataaaagccagacttgatgagctggcagt-ttgccctaaacaatcctgattttccctcct 350  Q
    |||||||| ||||||||||||| |||||| ||||||||| ||| ||||| || |||| ||||| ||||||    
T  5100 atcctttactataaaagccagatttgatgtgctggcagtgttgtcctaatcactccttatttttcctcct 5169  T

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