View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14392_low_23 (Length: 463)
Name: NF14392_low_23
Description: NF14392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14392_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 190 - 447
Target Start/End: Original strand, 54117902 - 54118163
Alignment:
| Q |
190 |
ttaatgaataagtctcgtgcttctcaactgatcttctag----tgatatcttgatttaatttctaattatagcaaccgaaacatataactcaaactgatc |
285 |
Q |
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| T |
54117902 |
ttaatgaataagtctcgtgcttctcaactgatcttctagctagtgatatcttgatttaatttctaattatagcaaccgaaacatataactcaaactgatc |
54118001 |
T |
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| Q |
286 |
aataagcactatatcattaatctttttg-aaactattatagcattaatcttataacaagagtttgagaagatacatactaattgcaatttgcaagcaaaa |
384 |
Q |
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| T |
54118002 |
aataagcactatatcattaatctttttgaaaactattatagcattaatcttataacaagagtttgagaagatacatactaattgcaatttgcaagcaaaa |
54118101 |
T |
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| Q |
385 |
gaagaaaaaagttaatcaatgagacaaatcgtataacaccagtggggaataagtcaatcaaat |
447 |
Q |
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| T |
54118102 |
gaagaaaaaagtt-atcaatgagacatatcgtataacaccagtggggaataagtcaatcaaat |
54118163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 54117666 - 54117853
Alignment:
| Q |
1 |
catcatctataagacactcttcatcaaagtatattttaagttcagacttacaatcatttgaaatcttctgtagcttttcttcacggtattcctattgaga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
54117666 |
catcatctataagacactcttcatcaaagtatattttaagttcagacttacaatcatttgaaatcttttgtatcttttcttcacggtattcctattgaga |
54117765 |
T |
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| Q |
101 |
cgtgcggaaactattcaaattaggcatcaagcaaactagccaaacggtgggaaatgtttcttactagctaatcaaacttaatgagcaa |
188 |
Q |
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| T |
54117766 |
cgtgcggaaactattcaaattaggcatcaagcaaactagccaaacggtgggaaatgtttcttactagctaatcaaacttaatgagcaa |
54117853 |
T |
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