View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14392_low_25 (Length: 459)
Name: NF14392_low_25
Description: NF14392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14392_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 18 - 445
Target Start/End: Original strand, 41244666 - 41245093
Alignment:
| Q |
18 |
cctttcttcaagtaccgaccgattcttccaactggaaattgaagaccagctctgatggatctggtcacagacttcttccttggtcctccacctttccttc |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41244666 |
cctttcttcaagtaccgaccgattcttccaactggaaattgaagaccagctctgatggatctggtcacagacttcttccttggtcctccacctttccttc |
41244765 |
T |
|
| Q |
118 |
caccagctcctttcttcgtcttggtgcttgcgtccatttctgagattggaatttggaaccctaacttttttgctacgaattcggtgtgaaatggaagctt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41244766 |
caccagctcctttcttcgtcttggtgcttgcgtccatttctgagattggaatttggaaccctaacttttttgctacgaattcggtgtgaaatggaagctt |
41244865 |
T |
|
| Q |
218 |
ttaagtagtgataattgtaattgttgtgagttgaataatcgtttacacgtttatatagcgtttaggatctttatcgaaaatttgtgtttatgacagcgta |
317 |
Q |
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|||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41244866 |
ttaagtggtgataattctaattgttgtgagttgaataatcgtttacacgtttatatagcgtttaggatctttatcgaaaatttgtgtttatgacagcgta |
41244965 |
T |
|
| Q |
318 |
gcgatccgtgcgtgatcttgcaatggagaagattgtaaacgttggatttgatgttatcgacggatgaggattgtttgcttggcgatccgtgtgttttgaa |
417 |
Q |
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|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41244966 |
gcgatccgtgcgtgatcttgcaatggaaaagattgtaaacgttggatttgatgttatcgacggatgaggattgtttgcttggcgatccgtgtgttttgaa |
41245065 |
T |
|
| Q |
418 |
atggaccaatgaatgcgctgatcctatg |
445 |
Q |
| |
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|||||||||||||||||||||| ||||| |
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|
| T |
41245066 |
atggaccaatgaatgcgctgattctatg |
41245093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 41257639 - 41257454
Alignment:
| Q |
18 |
cctttcttcaagtaccgaccgattcttccaactggaaattgaagaccagctctgatggatctggtcacagacttcttccttggtcctccacctttccttc |
117 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| ||||| |||||||||||||| || ||||||||||| |
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|
| T |
41257639 |
cctttcttcaagtaacgaccgattcttccgactggaaattgaagaccagctctggtggatcttgtcactgacttcttccttggacc---acctttccttc |
41257543 |
T |
|
| Q |
118 |
caccagctcctttcttcgtcttggtgcttgcgtccatttctgagattggaatttggaaccctaacttttttgctacgaattcggtgtga |
206 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||| |
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| T |
41257542 |
caccagctcccttcttcgtcttggtgcttgcgtccatttctgagattggaatttggaactctagattttttgctacgaattcgctgtga |
41257454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 6e-38; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 23423671 - 23423813
Alignment:
| Q |
18 |
cctttcttcaagtaccgaccgattcttccaactggaaattgaagaccagctctgatggatctggtcacagacttcttccttggtcctccacctttccttc |
117 |
Q |
| |
|
|||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| || ||||||| |
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|
| T |
23423671 |
cctttcttcaagtatctaccgattcttccaaccggaaattgaagaccagctctgatggatcttgtcaccgacttcttccttggtcctcctcccttccttc |
23423770 |
T |
|
| Q |
118 |
caccagctcctttct---tcgtcttggtgcttgcgtccatttc |
157 |
Q |
| |
|
| || ||||| |||| | |||||||||||||| |||||||| |
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|
| T |
23423771 |
ctcctgctcccttctttgttgtcttggtgcttgcctccatttc |
23423813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 24298073 - 24297931
Alignment:
| Q |
18 |
cctttcttcaagtaccgaccgattcttccaactggaaattgaagaccagctctgatggatctggtcacagacttcttccttggtcctccacctttccttc |
117 |
Q |
| |
|
|||||||||||||| | |||||||||||| ||||||||||||||||| |||||||| ||||| ||||| |||||||||||||||||||| |||||||||| |
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|
| T |
24298073 |
cctttcttcaagtatctaccgattcttcccactggaaattgaagaccggctctgattgatcttgtcaccgacttcttccttggtcctcctcctttccttc |
24297974 |
T |
|
| Q |
118 |
caccagctcctttcttcgt---cttggtgcttgcgtccatttc |
157 |
Q |
| |
|
|||| ||||| |||||||| ||| | ||||||||||||||| |
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|
| T |
24297973 |
caccggctcccttcttcgttgcctttgggcttgcgtccatttc |
24297931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 23875282 - 23875140
Alignment:
| Q |
18 |
cctttcttcaagtaccgaccgattcttccaactggaaattgaagaccagctctgatggatctggtcacagacttcttccttggtcctccacctttccttc |
117 |
Q |
| |
|
|||||||||||||| | |||||||||||| ||||||||||||||||| |||||||| ||||| ||||| |||||||||||||| ||||| |||||||||| |
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|
| T |
23875282 |
cctttcttcaagtatctaccgattcttcccactggaaattgaagaccggctctgattgatcttgtcaccgacttcttccttggacctcctcctttccttc |
23875183 |
T |
|
| Q |
118 |
caccagctcctttct---tcgtcttggtgcttgcgtccatttc |
157 |
Q |
| |
|
|||| ||||| |||| | |||||||||||||| |||||||| |
|
|
| T |
23875182 |
caccggctcccttctttgttgtcttggtgcttgcctccatttc |
23875140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 23448171 - 23448286
Alignment:
| Q |
18 |
cctttcttcaagtaccgaccgattcttccaactggaaattgaagaccagctctgatggatctggtcacagacttcttccttggtcctccacctttccttc |
117 |
Q |
| |
|
|||||||||||||| | |||||||||||| ||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||| |||| || ||||||| |
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|
| T |
23448171 |
cctttcttcaagtatctaccgattcttcccactggaaattgaagaccggctctgattgatcttgtcaccgacttcttccttggttctcctcccttccttc |
23448270 |
T |
|
| Q |
118 |
caccagctcctttctt |
133 |
Q |
| |
|
|||| ||||||||||| |
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|
| T |
23448271 |
caccggctcctttctt |
23448286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 17 - 156
Target Start/End: Complemental strand, 26827835 - 26827693
Alignment:
| Q |
17 |
acctttcttcaagtaccgaccgattcttccaactggaaattgaagaccagctctgatggatctggtcacagacttcttccttggtcctccacctttcctt |
116 |
Q |
| |
|
||||||||||| ||| || ||||||||||| ||||| ||||| || || |||||||||||||| ||||| |||||||||||||| ||||| || |||||| |
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|
| T |
26827835 |
acctttcttcaggtaacggccgattcttccgactgggaattggagtccggctctgatggatcttgtcaccgacttcttccttggacctcctcccttcctt |
26827736 |
T |
|
| Q |
117 |
ccaccagctcctttct---tcgtcttggtgcttgcgtccattt |
156 |
Q |
| |
|
||||| |||||||||| | |||||||||||||||||||||| |
|
|
| T |
26827735 |
ccaccggctcctttctttgttgtcttggtgcttgcgtccattt |
26827693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 17 - 156
Target Start/End: Complemental strand, 35961617 - 35961475
Alignment:
| Q |
17 |
acctttcttcaagtaccgaccgattcttccaactggaaattgaagaccagctctgatggatctggtcacagacttcttccttggtcctccacctttcctt |
116 |
Q |
| |
|
||||||||||||||| || ||||||||||| ||||| |||||||| || |||||||| ||||| || || |||||||||||||||||||| ||||| ||| |
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|
| T |
35961617 |
acctttcttcaagtaacggccgattcttcccactgggaattgaagtccggctctgattgatcttgttaccgacttcttccttggtcctccgccttttctt |
35961518 |
T |
|
| Q |
117 |
ccaccagctcctttcttcgt---cttggtgcttgcgtccattt |
156 |
Q |
| |
|
|| || |||||||||||||| ||| |||||||||||||||| |
|
|
| T |
35961517 |
cctcctgctcctttcttcgttgcctttgtgcttgcgtccattt |
35961475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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