View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14392_low_26 (Length: 450)
Name: NF14392_low_26
Description: NF14392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14392_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 136; Significance: 9e-71; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 206 - 366
Target Start/End: Original strand, 19146852 - 19147016
Alignment:
| Q |
206 |
ctctttggccttgacctagggtggtgagttgatcaacgatgggttttcatgttctgatggcgctatctctttgagagttgctaacaaggcggtatgc--- |
302 |
Q |
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| T |
19146852 |
ctctttggccttgacctagggtggtgagttgatcaacgatgggttttcatgttctgatggcgctatctctttgtgagttgctaacaaggcggtatgctcg |
19146951 |
T |
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| Q |
303 |
-tcaaaagtgagaggtacttgtgtggctcctcgtgttccaatagtagattatctccttggtgatg |
366 |
Q |
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| T |
19146952 |
atcaaaagtgagaggtacgtgtgtggctcctcgtgtgccaatagtagattatctccttggtgatg |
19147016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 15 - 143
Target Start/End: Original strand, 19146668 - 19146798
Alignment:
| Q |
15 |
caaaggtttactattactattgg------gtggcattagtttggataagtatatatatgcttataaattgttatctgaacattttgtcatgattcgtgta |
108 |
Q |
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| T |
19146668 |
caaaggtttactattactattggcattgggtggcattagtttggataagtata----tgcttataaattgttatctgaacattttgtcatgattcgtgta |
19146763 |
T |
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| Q |
109 |
cttgcatgtttatagttgctgagttcgagtcaaac |
143 |
Q |
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| T |
19146764 |
cttgcatgtttatagttgctgagttcgagtcaaac |
19146798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 375 - 437
Target Start/End: Original strand, 19147261 - 19147324
Alignment:
| Q |
375 |
tctttatcgatgatttt-ttgcatttataatgatgtatttgtgaattgtttatgatgatattcg |
437 |
Q |
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| T |
19147261 |
tctttatcaatgatttttttgcatttataatgatgtatttgtgaattgtttatgatgatattcg |
19147324 |
T |
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