View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14392_low_27 (Length: 450)
Name: NF14392_low_27
Description: NF14392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14392_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 26886023 - 26886442
Alignment:
| Q |
1 |
attatcggcatcattttcaacgatcacaccggaacattgattcaattcttggtcccctataaaggaagaaaaaacaatgattattgtaatgtagcaagat |
100 |
Q |
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| T |
26886023 |
attattggcatcattttcaacgatcacaccggaacattgattcaattcttggtcccctataaaggaa-aaaaagcaatgattattgtaatgtagcaagat |
26886121 |
T |
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| Q |
101 |
cattaaaagaaagagagaaagggaatttgagagttgaatagaatacaataccagtagtataagataaaagagcaacaacagaagaagaaaccttaagagc |
200 |
Q |
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| T |
26886122 |
cattaaaagaaagagagaaaaggaattggagagttgaatagaatacaataccagtagtataagataaaagagcaacaacagaagaagaaaccttaagagc |
26886221 |
T |
|
| Q |
201 |
agctttctttgtctgtatatccagaaagacattatcatctttagaattgaactttggtcgcttagataagttttttatgcgatgcataagttccggatcc |
300 |
Q |
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| T |
26886222 |
agctttctttgtctgtaaatccagaaagacattatcatctttagaattgaactttggtcgcttagataagttttttatgcgatgcataagttccggatcc |
26886321 |
T |
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| Q |
301 |
ggctctgcatgcaacaatggattatttgtctgtgacatagattaagtacttaattaagaataatagtttnnnnnnnnnnnnnnnnnggaaaatcttactg |
400 |
Q |
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| T |
26886322 |
ggctctgcatgcaacaatggattatttgtctgtgacatagattaagtacttaattaagaataatagtttaaaaaaaaaaaaa----ggaaaatcttactg |
26886417 |
T |
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| Q |
401 |
taattttctggattgaattcctctt |
425 |
Q |
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| T |
26886418 |
taattttctggattgaattcctctt |
26886442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 104 - 235
Target Start/End: Complemental strand, 26631216 - 26631080
Alignment:
| Q |
104 |
taaaagaaagagagaaagggaatttgagagttgaatagaatacaata-----ccagtagtataagataaaagagcaacaacagaagaagaaaccttaaga |
198 |
Q |
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|||||||||||||||||||||||| || |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
26631216 |
taaaagaaagagagaaagggaattggaaagttgaatagaatagaataaaataccagtagtataagataaaagagcaacaacagaagaagaagccttgaga |
26631117 |
T |
|
| Q |
199 |
gcagctttctttgtctgtatatccagaaagacattat |
235 |
Q |
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| T |
26631116 |
gcagctttctttgtatttacatccagataggcattat |
26631080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 26631309 - 26631252
Alignment:
| Q |
1 |
attatcggcatcattttcaacgatcacaccggaacattgattcaattcttggtcccct |
58 |
Q |
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| T |
26631309 |
attattggcatcattttcaatgataacaccagaacattgattaaactcttggtcccct |
26631252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 421
Target Start/End: Complemental strand, 26630946 - 26630912
Alignment:
| Q |
387 |
ggaaaatcttactgtaattttctggattgaattcc |
421 |
Q |
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| T |
26630946 |
ggaaaatcttactgtaatattctggattgaattcc |
26630912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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