View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14392_low_29 (Length: 433)
Name: NF14392_low_29
Description: NF14392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14392_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 4 - 408
Target Start/End: Complemental strand, 34621701 - 34621296
Alignment:
| Q |
4 |
gaagagtataatgtactaatagtgtttagctcacattgaccgaagggttagaagagtctcaaaatttctttttgatcgtttttaccactttcttttgtta |
103 |
Q |
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| T |
34621701 |
gaagagtataatgtactaatagtgtttagctcacattgaccgaagggttagaagagtctcaaaatttctttttgatcgtttttaccactttcttttgtta |
34621602 |
T |
|
| Q |
104 |
ggcttgtttcagttgttcgagactgnnnnnnntggaaaaagttaggttggaaatgatctctaaggaagaaagataaaggaagtaagacaagaatattagt |
203 |
Q |
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| T |
34621601 |
ggcttgtttcagttgttcgagactgaaaaaaatggaaaaagttagattggaaatgatctctaaggaagaaagataaaggaagtaagacaagaatattagt |
34621502 |
T |
|
| Q |
204 |
gatatttgcaatagagaccacattgttcttcttggctgtggtctgaaatattatactttgaccctgctattaatgttgccgtaggaataagccttgttac |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34621501 |
gatatttgcaatagagaccacattgttcttcttggctgtggtctgaaatattatactttgaccctgctattaatgttgccgtaggaataagccttgttac |
34621402 |
T |
|
| Q |
304 |
gagcttgaaacgaagtgcacaactagggaatgtccatggtagatt-ttttaagtttaaagtgcattattactcgtgcgtgcactttactaacaagtatta |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34621401 |
gagcttgaaacgaagtgcacaactagggaatgtccatggtagatttttttaagtttaaagtgcattattactcgtgcgtgcactttactaacaagtatta |
34621302 |
T |
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| Q |
403 |
gaaaag |
408 |
Q |
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|||||| |
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| T |
34621301 |
gaaaag |
34621296 |
T |
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