View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14392_low_30 (Length: 431)
Name: NF14392_low_30
Description: NF14392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14392_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 104 - 413
Target Start/End: Complemental strand, 13604519 - 13604209
Alignment:
| Q |
104 |
gttttttggctcgcaggaaatttaaatcttgactctattcttaacatcaataattgtattgactcataaaatcatattatttaattatattggaaaatat |
203 |
Q |
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| T |
13604519 |
gttttttggctcgcaggaaatttaaatcctgactctattcttaacatcaataatt--attgactcataaaatcatattatttaattatattggaaaatat |
13604422 |
T |
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| Q |
204 |
ataggacaactatttgtgactaaaacatttctctcgtgttgttctatttgttcggacaaagtgattaaaagtttagagaaatataactaaaagtgtggga |
303 |
Q |
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| T |
13604421 |
atagaacaactatttgtgactaaaacatttctctcgtgttgttctatttgttcggacaaagagattaaaagtttagagaaatataactaaaagtgtgaga |
13604322 |
T |
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| Q |
304 |
gaattcatatgagtaac---aacattcactacgacatgcaaataaaattataatattagaaaatatagaattattttcgacttaactattaaacgcataa |
400 |
Q |
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| T |
13604321 |
gaattcacatgagtaacaacaacattcactacgatatgcaaacaaaattataatattagaaaatatagaattattttcgacttaactattaaacgcataa |
13604222 |
T |
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| Q |
401 |
acattgaccgttt |
413 |
Q |
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| T |
13604221 |
acattgaccgttt |
13604209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 330
Target Start/End: Complemental strand, 4647912 - 4647864
Alignment:
| Q |
282 |
aaatataactaaaagtgtgggagaattcatatgagtaacaacattcact |
330 |
Q |
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| T |
4647912 |
aaatataactcaaagtgtgagagaaaccataagagtaacaacattcact |
4647864 |
T |
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