View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14392_low_32 (Length: 424)
Name: NF14392_low_32
Description: NF14392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14392_low_32 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 14 - 407
Target Start/End: Complemental strand, 38728822 - 38728429
Alignment:
| Q |
14 |
caaaggctgtgggaattccgacaattgacctttccatggaacggtcagagttgtcggaattagttgtgaaagcttgcgaagaatatggnnnnnnnaaggt |
113 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38728822 |
caaaggccgtgggaattccgacaattgacctttccatggaaaggtcagagttgtcggaattagttgtgaaagcttgcgaagaatatggtttttttaaggt |
38728723 |
T |
|
| Q |
114 |
ggtgaatcatggtataccaaaggaggttatttcaaggttggaaaatgaaggaacagagtttttctcaaaaaactcttcagagaaacttcaagctggtact |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38728722 |
ggtgaatcatggtataccaaaggaggttatttcaaggttggaaaatgaaggaacagagtttttctcaaaaaactctacagagaaacttcaagctggtact |
38728623 |
T |
|
| Q |
214 |
tctactccttttggttatggctgcaaaaatattggtcccaatggtgataaaggtgaccttgaatatcttctccttcacaccaatcctaattcaatctctg |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38728622 |
tctactccttttggttatggctgcaaaaatattggtcccaatggtgataaaggtgaccttgagtatcttctccttcacaccaatcctaattcaatctctg |
38728523 |
T |
|
| Q |
314 |
agagatccaaaaccatagcaaaagaccaccctatcaagttcaggtattgattcagtctctcattaatcgtaacttaattagataaaatatttgt |
407 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38728522 |
agagatccaaaaccattgcaaaagatcaccctatcaagttcaggtattgattccgtcactcattaattgtaacttaattagataaaatatttgt |
38728429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University