View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14392_low_33 (Length: 422)
Name: NF14392_low_33
Description: NF14392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14392_low_33 |
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Alignment Details
Target: chr6 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 10 - 405
Target Start/End: Original strand, 23931859 - 23932254
Alignment:
| Q |
10 |
aagaatatataccattatttactggaatcatagatcaatgacacgtttcctggacttcaatattttgagacaaaactcgaggttttatcattaactatag |
109 |
Q |
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| T |
23931859 |
aagaaaatataccattatttactggaatcatagatcaatgacacgtttcctggacttcaatattttgagacaaaactcgaggttttatcattaactatag |
23931958 |
T |
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| Q |
110 |
ggccttacacacaaactcgtaaatccctagtcacatagaagcaacttcaagtatcacgctaagggtctccttttcaaggttttcttataactagataata |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
23931959 |
ggccttacacacaaactcgtaaatccctagtcacatagaagcaacttcaagtatcacgctaagggtctccttctcaaggttttcttataactagataata |
23932058 |
T |
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| Q |
210 |
acttattttggaaaaacatttaaatgcaatgagtggttcgtacccgctgtctacggcgttcttgttccttttcttgccgtaataagatgtagtcttcaag |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
23932059 |
acttattttggaaaaacatttaaatgcaatgagtggttcgtacccgctgtctacgacgttcttgctccttttcttgccgtaataagatgtagtcttcaag |
23932158 |
T |
|
| Q |
310 |
catagaaactaaacggacctagaaagcgacattccaataaaaattagtttgacatagacattaccaaccaatagatgctgaggtgatattgtatgt |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
23932159 |
catagaaactaaacggacctagaaagcgacattccaataaaaattagtttgacatagacatgagcaaccaatagatgctgaggtgatattgtatgt |
23932254 |
T |
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