View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14392_low_35 (Length: 410)
Name: NF14392_low_35
Description: NF14392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14392_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 45096802 - 45097195
Alignment:
| Q |
1 |
caaaatacattgataagctaaaaaggtacaatgaaaagaatgggatataagaccaaaccctcaaaaagagctaacaaaatcgtaaattgcaaaacctaat |
100 |
Q |
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| T |
45096802 |
caaaatacattgataagctaaaaaggtacaatgaaaagaatgggatataagaccaaaccctcaaaaagagctaacaaaatcgtaaattgtaaaacctaat |
45096901 |
T |
|
| Q |
101 |
ctatttctaatataatcgtctctaatttggttaggcaactgagaccaccaagcataagaactcaaacttaaacgaagattagcaagctaatcagcacatt |
200 |
Q |
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| T |
45096902 |
ctatttctaatatagtcgtctctaatttggttaggcaactgaaaccaccaagcataagaactcaaacttaaacgaagattagcaagctaatcagcacgtt |
45097001 |
T |
|
| Q |
201 |
gatttactgctctgtaaatgtgaatagaatgaaatagaaggacgtagaggaaatgaaatagagacaattctctcatctgttcttcaatcaacggccaagg |
300 |
Q |
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| T |
45097002 |
gatttactgctctgtaaatgtgaatagaatgaaatagaaggacgtagaggaaatgaaatagagacaattctctcatctgttcttcaatcaacggccacgg |
45097101 |
T |
|
| Q |
301 |
gacaaccttagaagacttgaaagccaagaaaacaagcatatttctcatgagcactttatgctgcatttgtagcaccaatgagttcagtattaag |
394 |
Q |
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| T |
45097102 |
gacaaccttagaagacttgaaagccaagaaaacaagcatatttctcatgagcactctatgctgcattcgtagcaccaatgagttcagtattaag |
45097195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 294 - 335
Target Start/End: Original strand, 11775891 - 11775932
Alignment:
| Q |
294 |
gccaagggacaaccttagaagacttgaaagccaagaaaacaa |
335 |
Q |
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| T |
11775891 |
gccaagggacaaccttagaagacttgaaagctaagaaaacaa |
11775932 |
T |
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