View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14392_low_41 (Length: 368)
Name: NF14392_low_41
Description: NF14392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14392_low_41 |
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| [»] scaffold0096 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 7 - 355
Target Start/End: Original strand, 30391346 - 30391684
Alignment:
| Q |
7 |
taaattatagagatggataaccttactcttccactcatcccacgcaaacataatcaagtatacaaagtttctcttcctcgcaacacatagaaatt---ta |
103 |
Q |
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| T |
30391346 |
taaattatagagatggataaccttactcttctactcatcccacgcaaacataatcaagtatacaaagtttcttttcctcacaacacatagatattattta |
30391445 |
T |
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| Q |
104 |
gacaagatgggtgagttaacattttgtgagaaagttaatgcgtggttcaacatttataaatcatacttgcttatgttaggtatcgaacttggttcggcta |
203 |
Q |
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| T |
30391446 |
gacatgatgggtgagttaacattttgtgagaaagttaatgcatggttcaaaatttataaatcatacttgcctatgttaggtatcgaacttggttcggcta |
30391545 |
T |
|
| Q |
204 |
gcatgtttgttattacaatggctgcctttaacaagggcatgagtcattatgtttttgtggtatatcata--gccattgcaactattgctcttgctccctt |
301 |
Q |
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| T |
30391546 |
gcatgtttgttattacaatggctgcctttaacaagggcatgagtcattatgtttttgtggtatatcgtaatgccattgca---------------ccctt |
30391630 |
T |
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| Q |
302 |
cgcctttttccttgaaaggtattatagagagagtggattaaatttgggggagaa |
355 |
Q |
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| T |
30391631 |
cgcctttttccttgaaaggtattatagagagagtggattaaatttgggagagaa |
30391684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 275 - 326
Target Start/End: Original strand, 32164250 - 32164301
Alignment:
| Q |
275 |
cattgcaactattgctcttgctcccttcgcctttttccttgaaaggtattat |
326 |
Q |
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| T |
32164250 |
cattgcaactattgctcttgctccatttgcttatttccttgaaaggtattat |
32164301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 131; Significance: 7e-68; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 12 - 322
Target Start/End: Complemental strand, 47461 - 47163
Alignment:
| Q |
12 |
tatagagatggataaccttactcttccactcatcccacgcaaacataatcaagtatacaaagtttctcttcctcgcaacacatagaaatttagacaagat |
111 |
Q |
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| T |
47461 |
tatagagatgtataaccttactcttgcactcatcctacgcaaacataatcaagtatacaaagtttctcttcct--------------attaagataagat |
47376 |
T |
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| Q |
112 |
gggtgagttaacattttgtgagaaagttaatgcgtggttcaacatttataaatcatacttgcttatgttaggtatcgaacttggttcggctagcatgttt |
211 |
Q |
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| T |
47375 |
ggctgagttaacattttgccagaaagttaatgcgtgctgcaaattttataaatcatacttccttatgttcggaatccaacttggttctgctggcatgttt |
47276 |
T |
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| Q |
212 |
gttattacaatggctgcctttaacaagggcatgagtcattatgtttttgtggtatatcata--gccattgcaactattgctcttgctcccttcgcctttt |
309 |
Q |
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| T |
47275 |
gtcatcaccatgactgcctttaacaagggcatgagtcattacgtttttgtggtatatcgtaataccattgccacaattgctctcgctcccttagcctatt |
47176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 4e-63; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 12 - 232
Target Start/End: Original strand, 21094384 - 21094616
Alignment:
| Q |
12 |
tatagagatggataaccttactcttccactcatcccacgcaaacataatcaa-gtatacaaagtttctcttcctcgcaacacatagaaatttagaca--- |
107 |
Q |
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| T |
21094384 |
tatagagatgtataaccttactcttgcactcatcccactcaaacataatcaaagtatacaaagtttctcttcctcacaacacatagaaatttagagagga |
21094483 |
T |
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| Q |
108 |
--------agatgggtgagttaacattttgtgagaaagttaatgcgtggttcaacatttataaatcatacttgcttatgttaggtatcgaacttggttcg |
199 |
Q |
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| T |
21094484 |
ttaagataagatgggtgagttaacattttgttagaaagttaatgcgtgctgcaaattctataaatcatacttccttatgttcggaatccaacttggttct |
21094583 |
T |
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| Q |
200 |
gctagcatgtttgttattacaatggctgccttt |
232 |
Q |
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| T |
21094584 |
gctagcatgtttgttattacaatggctgccttt |
21094616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 107 - 326
Target Start/End: Complemental strand, 10626510 - 10626289
Alignment:
| Q |
107 |
aagatgggtgagttaacattttgtgagaaagttaatgcgtggttcaacatttataaatcatacttgcttatgttaggtatcgaacttggttcggctagca |
206 |
Q |
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|||||||||||||||||||||||||||||||||| ||| ||||| | | || |||||||| |||||||| || || | || |||| |||||| | | |
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| T |
10626510 |
aagatgggtgagttaacattttgtgagaaagttagtgcatggtttagaaattccaaatcatatttgcttatcctaagtttacaatttggatcggctggaa |
10626411 |
T |
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| Q |
207 |
tgtttgttattacaatggctgcctttaacaagggcatgagtcattatgtttttgtggtatatcata--gccattgcaactattgctcttgctcccttcgc |
304 |
Q |
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| T |
10626410 |
tgtatgttctgactatggatgcccttaacaagggcatgagtcactatatttttgtggtatatcgtaatgtcattgcaactattgctcttgctccatttgc |
10626311 |
T |
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| Q |
305 |
ctttttccttgaaaggtattat |
326 |
Q |
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| T |
10626310 |
ttttttccttgaaaggtattat |
10626289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 12 - 105
Target Start/End: Complemental strand, 10626628 - 10626534
Alignment:
| Q |
12 |
tatagagatggataaccttactcttccactcatcccacgcaaacataatcaagtatacaaagtttctcttcctcgcaacacat-agaaatttaga |
105 |
Q |
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||||||||||||||||||||||| | |||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
10626628 |
tatagagatggataaccttactcattcactcatcacactcaaacataatcaagtatacaaagtttctcttcctcacaacacataagaaatttaga |
10626534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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