View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14392_low_44 (Length: 360)
Name: NF14392_low_44
Description: NF14392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14392_low_44 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 171; Significance: 9e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 155 - 345
Target Start/End: Complemental strand, 18016215 - 18016025
Alignment:
| Q |
155 |
aatgtattggtcagtgtgtatttcaatataccttctcattcaataaaatatgatagaccattgaatccatttcgctaagtcctaaaactatttcattctc |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
18016215 |
aatgtattggtcagtgtgtatttcaatataccttctcattcaataaaatatgatagaccattgaatccatttctctaagtcctaaaactatttcattctc |
18016116 |
T |
|
| Q |
255 |
taatcctctcatgtgagtgatagtataatccgtgtattaccactacaagtgagtggttgttctaacaaatatggtctttgaccaacatagt |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
18016115 |
caatcctctcatgtgagtgatagtataatccgtgtattaccactacaagtgagtggttgttctaacaaatatggcttttcaccaacatagt |
18016025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 18016309 - 18016218
Alignment:
| Q |
1 |
gaaaagaaaaaat-caaagatgcatatcctcttgccttgaggcttttgctgaaggatttcttcagatccttgaaacagaacgatctaagact |
91 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
18016309 |
gaaaagaaaaaatacaaagatgcatatcctcttgccttgaggcttttgctgaaggatttcttcagatccttgaaacagaacgacctaagact |
18016218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 171; Significance: 9e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 155 - 345
Target Start/End: Original strand, 3063105 - 3063295
Alignment:
| Q |
155 |
aatgtattggtcagtgtgtatttcaatataccttctcattcaataaaatatgatagaccattgaatccatttcgctaagtcctaaaactatttcattctc |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3063105 |
aatgtattggtcagtgtgtatttcaatataccttctcattcaataaaatatgatagaccattgaatccatttctctaagtcctaaaactatttcattctc |
3063204 |
T |
|
| Q |
255 |
taatcctctcatgtgagtgatagtataatccgtgtattaccactacaagtgagtggttgttctaacaaatatggtctttgaccaacatagt |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
3063205 |
caatcctctcatgtgagtgatagtataatccgtgtattaccactacaagtgagtggttgttctaacaaatatggcttttcaccaacatagt |
3063295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 3063012 - 3063102
Alignment:
| Q |
1 |
gaaaagaaaaaatcaaagatgcatatcctcttgccttgaggcttttgctgaaggatttcttcagatccttgaaacagaacgatctaagact |
91 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3063012 |
gaaaagaaaaaatcaaagatgcatatcctcttgccttgaggcttttgctgaaggatttcttcagatccttgaaacagaacgacctaagact |
3063102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University