View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14392_low_46 (Length: 341)
Name: NF14392_low_46
Description: NF14392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14392_low_46 |
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Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 1903072 - 1903383
Alignment:
| Q |
1 |
gtagggtagggttagtattatgcaaaatgagagatattatacattaaaaattaaagtccataaagtatatgaatattgacacagtcacgaacaccagata |
100 |
Q |
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| T |
1903072 |
gtagggtagggttagtattatgcaaaatgagagatattatacattaaaaattaaagtccataaagtatatgaatattgacacagtcacgaacaccatata |
1903171 |
T |
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| Q |
101 |
taacactgacactaggacatagacgccaatattaatttgatgaaatggaaaagattggatgtaacacgcatgtctatgtctgacaccagcacgtgccaaa |
200 |
Q |
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| T |
1903172 |
taacactgacactaggacatagacatcaataataatttgatgaaatggaaaagattggatgtaacatgcatgtctatgtctgacaccagcacgtgccaaa |
1903271 |
T |
|
| Q |
201 |
cactaatgcctgttgaacactgaacacgccttcaatgtgaagtatcggtcggtgctgcatagtatttactagaatgtgtcacaattggcttccttacaat |
300 |
Q |
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| T |
1903272 |
cactaatgcctgttgaacactgaacacgccttcaatgtgaagta----tcggtgctgcatagtatttactagaatgtgtcacaattggcttccttacaat |
1903367 |
T |
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| Q |
301 |
gaaatattttttcatt |
316 |
Q |
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| T |
1903368 |
gaaatattttttcatt |
1903383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 1907305 - 1907616
Alignment:
| Q |
1 |
gtagggtagggttagtattatgcaaaatgagagatattatacattaaaaattaaagtccataaagtatatgaatattgacacagtcacgaacaccagata |
100 |
Q |
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| T |
1907305 |
gtagggtagggttagtattatgcaaaatgagagatattatacattaaaaattaaagtccataaagtatatgaatattgacacagtcacgaacaccatata |
1907404 |
T |
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| Q |
101 |
taacactgacactaggacatagacgccaatattaatttgatgaaatggaaaagattggatgtaacacgcatgtctatgtctgacaccagcacgtgccaaa |
200 |
Q |
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| T |
1907405 |
taacactgacactaggacatagacatcaataataatttgatgaaatggaaaagattggatgtaacatgcatgtctatgtctgacaccagcacgtgccaaa |
1907504 |
T |
|
| Q |
201 |
cactaatgcctgttgaacactgaacacgccttcaatgtgaagtatcggtcggtgctgcatagtatttactagaatgtgtcacaattggcttccttacaat |
300 |
Q |
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| T |
1907505 |
cactaatgcctgttgaacactgaacacgccttcaatgtgaagta----tcggtgctgcatagtatttactagaatgtgtcacaattggcttccttacaat |
1907600 |
T |
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| Q |
301 |
gaaatattttttcatt |
316 |
Q |
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| T |
1907601 |
gaaatattttttcatt |
1907616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 143 - 277
Target Start/End: Original strand, 1897876 - 1898006
Alignment:
| Q |
143 |
aaatggaaaagattggatgtaacacgcatgtctatgtctgacaccagcacgtgccaaacactaatgcctgttgaacactgaacacgccttcaatgtgaag |
242 |
Q |
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||||||||| ||||| || ||||| ||||||||||||| ||||||||||||||||| ||| || | ||||| |||||||||||| |||||| ||||| |
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| T |
1897876 |
aaatggaaatgattgaatttaacatgcatgtctatgtccgacaccagcacgtgccagacatcgatacatgttggacactgaacacgttttcaatatgaag |
1897975 |
T |
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| Q |
243 |
tatcggtcggtgctgcatagtatttactagaatgt |
277 |
Q |
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|| || ||||| |||||||||||||||||||| |
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| T |
1897976 |
ta----tcagtgctacatagtatttactagaatgt |
1898006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 1897627 - 1897676
Alignment:
| Q |
75 |
attgacacagtcacgaacaccagatataacactgacactaggacatagac |
124 |
Q |
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| T |
1897627 |
attgacacagtcacgaacaccagacataatactgacactagcacgtagac |
1897676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 1892137 - 1892189
Alignment:
| Q |
5 |
ggtagggttagtattatgcaaaatgagagatattatacattaaaaattaaagt |
57 |
Q |
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|||||| ||||||||||||||||||||||| |||||| |||| |||| |||| |
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| T |
1892137 |
ggtaggattagtattatgcaaaatgagagacgttatactttaagaattgaagt |
1892189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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