View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14392_low_47 (Length: 340)
Name: NF14392_low_47
Description: NF14392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14392_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 36910228 - 36909915
Alignment:
| Q |
1 |
cgttaaaacaggttctcattaatatctttatttactattatttactatgaatcgtagataaatgaaagacaaacagacatccaactgtgaggctaacctc |
100 |
Q |
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| T |
36910228 |
cgttaaaacaggttctcattaatatctttatttactattatttacgatgaattatagataaatgaaagacaaatagacaaccaactgtgaggctaatctc |
36910129 |
T |
|
| Q |
101 |
ttttaaatgacaaaatcaattatcttaaacaaaacatttatgaatatatgagacataacaatgcatgactgtttgagctcttttaaagtcaaccgtctct |
200 |
Q |
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| T |
36910128 |
ttttaaatgacaaaatcaattatcttaaacacaacatttatgaatatatgagacataacaatgcatgactctttaagctcttttatagtcaaccgtctct |
36910029 |
T |
|
| Q |
201 |
gtcgttaagaagctaaaaatatcaaaatttgatgatataaaaacatgttgattattaaaacacgnnnnnnngtgttttaatctccaaatttttataattg |
300 |
Q |
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| T |
36910028 |
aatgttaagaagctaaaaatatcaaaatttgatgatataaaaacatgttgattattaaaacacggtttcttgtgttttaatctccaaattttcataattg |
36909929 |
T |
|
| Q |
301 |
cctcaacttatata |
314 |
Q |
| |
|
|||||| ||||||| |
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| T |
36909928 |
cctcaatttatata |
36909915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 144
Target Start/End: Original strand, 18176831 - 18176874
Alignment:
| Q |
101 |
ttttaaatgacaaaatcaattatcttaaacaaaacatttatgaa |
144 |
Q |
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| T |
18176831 |
ttttaaatgacaaaattaattatcgtaaacacaacatttatgaa |
18176874 |
T |
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