View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14392_low_48 (Length: 337)
Name: NF14392_low_48
Description: NF14392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14392_low_48 |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 45342665 - 45342983
Alignment:
| Q |
1 |
attcaagtagtcactgatgtctactatgttccagagttgaaaaataacttactgagtgtaggccagcttcaagaaaaaggattaactttacttatacaaa |
100 |
Q |
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| T |
45342665 |
attcaagtagtcactgatgtctactatgttccaaagttgaaaaataacttactgaatgtaggccaacttcaagaaaaaggattaactttacttatacaaa |
45342764 |
T |
|
| Q |
101 |
atggaacatgcaagttattccatccaagaagaggattgctcatgcaaacaaaaatgacggcaaatcgaatgtttgtgctgctggctagtgtggtacttca |
200 |
Q |
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||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
45342765 |
atgaaacatgcaagttattccatcaaagaagaggattgttcatgcaaacaaaaatgacagcaaatcgaatgtttgtgctgctggctagtgtggtgcttca |
45342864 |
T |
|
| Q |
201 |
agagacctcaacgttcctacaattagctactgaagatagctcacaattgtggcatcgtagatttgggcacttgagttacaaaggtttgaggactttgcaa |
300 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45342865 |
agagacctcaacattcctacaattagctactgaagatagcttacaattgtggcatcgtagatttgggcacttgagttacaaaggtttgaggactttgcaa |
45342964 |
T |
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| Q |
301 |
tataaacagatggtgaagg |
319 |
Q |
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|||||||||||||| |||| |
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| T |
45342965 |
tataaacagatggtaaagg |
45342983 |
T |
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