View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14392_low_50 (Length: 334)
Name: NF14392_low_50
Description: NF14392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14392_low_50 |
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Alignment Details
Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 18677553 - 18677467
Alignment:
| Q |
16 |
agatgaatgtgtttgtatttaacacgttctaataattctcatgaagctggcaaggtaacacaataaaataaataagcaccggcgtgc |
102 |
Q |
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| T |
18677553 |
agatgaatgtgtttgtatttaacacgttctaataattctcatgaagctggcaaggtaacacaataaaataaataagcaccggcgtgc |
18677467 |
T |
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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 287 - 318
Target Start/End: Complemental strand, 18675036 - 18675005
Alignment:
| Q |
287 |
aaattttgaacaaaatggttaaggattgaagt |
318 |
Q |
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| T |
18675036 |
aaattttgaacaaaatggttaaggattgaagt |
18675005 |
T |
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