View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14392_low_52 (Length: 327)
Name: NF14392_low_52
Description: NF14392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14392_low_52 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 19 - 325
Target Start/End: Original strand, 25782769 - 25783075
Alignment:
| Q |
19 |
gaggaaacaaccacaatcgccgccgtccactccgacataatccaaacacacatactcacccgtctcgacggtcctgctcttgcttccgccgcaagcacct |
118 |
Q |
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| T |
25782769 |
gaggaaacaaccacaatcgccgccgtccactccgacataatccaaacacacatactcacccgtctcgacggtcctgctcttgcttccgccgcaagcacct |
25782868 |
T |
|
| Q |
119 |
gctcccaattcaactctctatgtaccaatgaacatctatgggctaacatgtgccactccacttggccttccaccaacactgaacgtgttcagcaagtaat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25782869 |
gctcccaattcaactctctatgtaccaatgaacatctatgggctaacatgtgccactccacttggccttccaccaacactgaacgtgttcagcaagtaat |
25782968 |
T |
|
| Q |
219 |
ctcaaacttcccaaatggctttcgctctttctttgcagactctttctcctctcatcatcaaagggatatgaatttaacaaatcatgacgaaaccctaagt |
318 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25782969 |
ctcaaacttcccaaatggcttccgctctttctttgcagactctttctcctctcatcatcaaagggatatgactttaacaaatcatgacgaaaccctaagt |
25783068 |
T |
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| Q |
319 |
ataatct |
325 |
Q |
| |
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|||||| |
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| T |
25783069 |
ttaatct |
25783075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 22 - 325
Target Start/End: Original strand, 26309921 - 26310224
Alignment:
| Q |
22 |
gaaacaaccacaatcgccgccgtccactccgacataatccaaacacacatactcacccgtctcgacggtcctgctcttgcttccgccgcaagcacctgct |
121 |
Q |
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|||||||| ||| || ||||||||||| ||||||||||||| | ||||||||||| || || ||||| | ||||| |||||||||||||||||||||| |
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| T |
26309921 |
gaaacaacgacattctccgccgtccacgacgacataatccaagctcacatactcacacgccttgacggggccgctctcgcttccgccgcaagcacctgct |
26310020 |
T |
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| Q |
122 |
cccaattcaactctctat--gtaccaatgaacatctatgggctaacatgtgccactccacttggccttccaccaacactgaacgtgttcagcaagtaatc |
219 |
Q |
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||||| |||||||||| | || ||||||||||||||||||| |||||||||||||||| | ||| ||||||||||||||||||||||| ||||||||| |
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| T |
26310021 |
cccaactcaactctctctctgttccaatgaacatctatgggccaacatgtgccactccatctagccatccaccaacactgaacgtgttcaacaagtaatc |
26310120 |
T |
|
| Q |
220 |
tcaaacttcccaaatggctttcgctctttctttgcagactctttctcctctcatcatcaaagggatatgaatttaacaaatcatgacgaaaccctaagta |
319 |
Q |
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|||| |||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||| | ||||| ||||| ||| ||||||||||| |
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| T |
26310121 |
tcaaccttccctaatggctcccgctctttctttgcaga--ctttctcctctcatcatcaaagggatataactttaagaaatcctgatcaaaccctaagtt |
26310218 |
T |
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| Q |
320 |
taatct |
325 |
Q |
| |
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|||||| |
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| T |
26310219 |
taatct |
26310224 |
T |
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