View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14392_low_53 (Length: 313)
Name: NF14392_low_53
Description: NF14392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14392_low_53 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 277
Target Start/End: Original strand, 38774281 - 38774539
Alignment:
| Q |
19 |
aaaacgtcgtggcaaaaccagactcactcaaaacaacacccgaaaaccaaggaaacctcgatatgaagttgaaattcaacaagaaaacaaagatggagct |
118 |
Q |
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| T |
38774281 |
aaaacgtcgtggcaaaaccagactcactcaaaacaacacccgaaaaccaaggaaacctcgatatgaagttgaaattcaacaagaaaacaaagatggagct |
38774380 |
T |
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| Q |
119 |
gttgggttggtggaagaagttggaaaacctagaaagagaaaatataacactcgacccaagaaggaaaaaacgaactttcctcaacctttgagtatgttaa |
218 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38774381 |
gttgggttggttgaagaagttggaaaacctagaaagagaaaatataacactcgacccaagaaggaaaaaacgaactttcctcaacctttgagtatgttaa |
38774480 |
T |
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| Q |
219 |
tgcaatgcacacttcatatttgaaaatatctaactgtttttgttacaatgaaaccctaa |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38774481 |
tgcaatgcacacttcatatttgaaaatatctaactgtttttgttacaatgaatccctaa |
38774539 |
T |
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