View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14392_low_57 (Length: 294)
Name: NF14392_low_57
Description: NF14392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14392_low_57 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 12 - 294
Target Start/End: Complemental strand, 17542395 - 17542120
Alignment:
| Q |
12 |
atcataaaaatgcatatgcctatgtttgttacaagttagcaagacccttagcatgtgaaagagtctgatagtgttgaggaagcatcaaaagccactgaag |
111 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
17542395 |
atcataaaaatgcatatgcctat-----ttacaagttagcaagacccttagcatgtgaaagagtctgatagtgttgaggaagcatcagaagctactgaag |
17542301 |
T |
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| Q |
112 |
ttccatagattgtaaaatctggacttcaaggttcatggttagccaaattctttgagaagacagagcttgttgtgctaaaaagtcaagaacatgatgttat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
17542300 |
ttccatagattgtaaaatctggacttcaaggttcatggttagccaaattctttgagaagacagagcctgttgtgctaaaaagtcaagaacatgaggttat |
17542201 |
T |
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| Q |
212 |
tatatctttcaagacaagttacaagttgatatggaagatcagaagttgactactgcagcagtgaaaactcaattatctgaagt |
294 |
Q |
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| T |
17542200 |
--tatctttcaagacaagttacaagttgatatggaagatccgaagctgactactgaagcagtgaaagctcaattatctgaagt |
17542120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 25455050 - 25455014
Alignment:
| Q |
12 |
atcataaaaatgcatatgcctatgtttgttacaagtt |
48 |
Q |
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||||||||||| |||||| |||||||||||||||||| |
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| T |
25455050 |
atcataaaaatacatatgtctatgtttgttacaagtt |
25455014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 39819722 - 39819686
Alignment:
| Q |
12 |
atcataaaaatgcatatgcctatgtttgttacaagtt |
48 |
Q |
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||||| ||||| ||||||||||||||||||||||||| |
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| T |
39819722 |
atcatgaaaatacatatgcctatgtttgttacaagtt |
39819686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 46960654 - 46960618
Alignment:
| Q |
12 |
atcataaaaatgcatatgcctatgtttgttacaagtt |
48 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
46960654 |
atcataaaaatgcatatgcctatgtttgttacaagtt |
46960618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 13931929 - 13931965
Alignment:
| Q |
12 |
atcataaaaatgcatatgcctatgtttgttacaagtt |
48 |
Q |
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||||||||||| ||||||||||||||||||||||||| |
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| T |
13931929 |
atcataaaaatacatatgcctatgtttgttacaagtt |
13931965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 1227923 - 1227959
Alignment:
| Q |
12 |
atcataaaaatgcatatgcctatgtttgttacaagtt |
48 |
Q |
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||||||||||| |||||||||||| |||||||||||| |
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| T |
1227923 |
atcataaaaatacatatgcctatgcttgttacaagtt |
1227959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 12930986 - 12931022
Alignment:
| Q |
12 |
atcataaaaatgcatatgcctatgtttgttacaagtt |
48 |
Q |
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|||||||||||||||||| |||||||||||||||||| |
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| T |
12930986 |
atcataaaaatgcatatggctatgtttgttacaagtt |
12931022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 13643096 - 13643059
Alignment:
| Q |
12 |
atcataaaaatgcatatgcctatgtttgttacaagtta |
49 |
Q |
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||||||||||| |||||| ||||||||||||||||||| |
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| T |
13643096 |
atcataaaaatacatatgtctatgtttgttacaagtta |
13643059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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