View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14392_low_58 (Length: 292)
Name: NF14392_low_58
Description: NF14392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14392_low_58 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 14 - 276
Target Start/End: Complemental strand, 38727879 - 38727621
Alignment:
| Q |
14 |
tactacacctttcaattagttggagaccattctgatgttaacagaatggattcattatattgggcttctattcatcttgatgagccctgtctctgacttt |
113 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38727879 |
tactacacttttcaattagttggagaccattctgatgttaacagaatggattcatt----tgggcttctattcatcttgatgagccctgtctctgacttt |
38727784 |
T |
|
| Q |
114 |
gtgtttacaaaactacataaccattttcctgacttgtaccaaaatcacattggtttttgttgtaacatcacaagagtactaaggaagaggttagagatta |
213 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38727783 |
gtgtgtacaaaactacataaccattttcctgacttgtaccaaaatcacattggtttttgttgtaacatcacaagagtactaagtaagaggttagagatta |
38727684 |
T |
|
| Q |
214 |
aaggatcacatggacacttgtcacatttatgtgtggaggttaaagtggtgtataccatgaatg |
276 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||| |
|
|
| T |
38727683 |
aagggtcacatggacacttgtcacatttgtgtgtggaggttaaaacggtgtataccacgaatg |
38727621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 4826291 - 4826107
Alignment:
| Q |
14 |
tactacacctttcaattagttggagaccattctgatgttaacagaatggattcattatattgggcttctattcatcttgatgagccctgtctctgacttt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4826291 |
tactacacctttcaattagttggagaccattctgatgttaacagaatggattcatt----tgggcttctattcatcttgatgagccctgtctctgacttt |
4826196 |
T |
|
| Q |
114 |
gtgtttacaaaactacataaccattttcctgacttgtaccaaaatcacattggtttttgttgtaacatcacaagagtactaaggaagag |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| |
|
|
| T |
4826195 |
gtgtttacaaaactacataaccattttcctgacttgtaccaaaatcacattggtttgtgttgtaacatgacaagagtactaagtaagag |
4826107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University