View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14392_low_67 (Length: 249)

Name: NF14392_low_67
Description: NF14392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14392_low_67
NF14392_low_67
[»] chr4 (10 HSPs)
chr4 (16-233)||(48205663-48205880)
chr4 (16-138)||(26984725-26984847)
chr4 (16-138)||(26998798-26998920)
chr4 (16-64)||(3461200-3461248)
chr4 (16-64)||(11652450-11652498)
chr4 (16-64)||(49106587-49106635)
chr4 (16-64)||(49108691-49108739)
chr4 (16-64)||(50077257-50077305)
chr4 (31-140)||(26982466-26982576)
chr4 (89-138)||(34496895-34496944)
[»] chr8 (8 HSPs)
chr8 (16-64)||(40054313-40054361)
chr8 (16-64)||(41841210-41841258)
chr8 (16-64)||(44878984-44879032)
chr8 (16-64)||(44880889-44880937)
chr8 (16-63)||(37679757-37679804)
chr8 (16-64)||(10944457-10944505)
chr8 (16-64)||(37682058-37682106)
chr8 (22-64)||(42872514-42872556)
[»] chr6 (4 HSPs)
chr6 (16-64)||(10791710-10791758)
chr6 (16-64)||(10795948-10795996)
chr6 (16-64)||(30521243-30521291)
chr6 (16-63)||(8875691-8875738)
[»] chr5 (3 HSPs)
chr5 (16-64)||(1716510-1716558)
chr5 (16-64)||(3643641-3643689)
chr5 (16-64)||(7524969-7525017)
[»] chr2 (15 HSPs)
chr2 (16-64)||(2841075-2841123)
chr2 (16-64)||(8973313-8973361)
chr2 (16-64)||(8979323-8979371)
chr2 (16-64)||(9008022-9008070)
chr2 (16-64)||(9023448-9023496)
chr2 (16-64)||(9026787-9026835)
chr2 (16-64)||(30732009-30732057)
chr2 (16-64)||(32918081-32918129)
chr2 (16-64)||(43850050-43850098)
chr2 (16-63)||(19232457-19232504)
chr2 (16-63)||(30733990-30734037)
chr2 (16-64)||(8984694-8984742)
chr2 (16-64)||(9020848-9020896)
chr2 (16-64)||(9032054-9032102)
chr2 (16-58)||(9030405-9030447)
[»] chr1 (19 HSPs)
chr1 (16-64)||(14652526-14652574)
chr1 (16-64)||(14654398-14654446)
chr1 (16-64)||(14662317-14662365)
chr1 (16-64)||(14664189-14664237)
chr1 (16-64)||(14667169-14667217)
chr1 (16-64)||(14669767-14669815)
chr1 (16-64)||(14674482-14674530)
chr1 (16-64)||(14676633-14676681)
chr1 (16-64)||(14679860-14679908)
chr1 (16-64)||(14683751-14683799)
chr1 (16-64)||(14706089-14706137)
chr1 (16-64)||(14708579-14708627)
chr1 (16-64)||(14716292-14716340)
chr1 (16-64)||(28366257-28366305)
chr1 (16-64)||(33988071-33988119)
chr1 (16-64)||(38175588-38175636)
chr1 (16-63)||(14681601-14681648)
chr1 (16-62)||(11872539-11872585)
chr1 (31-59)||(37422175-37422203)
[»] chr3 (1 HSPs)
chr3 (17-63)||(15758562-15758608)


Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 233
Target Start/End: Complemental strand, 48205880 - 48205663
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatgctctaaactgtgaagaaattctaaatttataacaaggctttgcgtgctttt 115  Q
    ||||||||||| || |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48205880 aagaacagatactacacttaatcttagctaaaaggccgagaaaggtatgctctaaactgtgaagaaattctaaatttataacaaggctttgcgtgctttt 48205781  T
Q  116 catacttctgagcgatgtgggacatacaatactcaattagcaatcgaagtatttgtaatattagtctgaacctgagactaacaactgattccaaacacgt 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  48205780 catacttctgagcgatgtgggacatacaatactcaattagcaatcgaagtatttgtaatattagtctgaacctgagactaacaactgattccaagcacgt 48205681  T
Q  216 caaaatcctccaaagaat 233  Q
    ||||||||||||||||||    
T  48205680 caaaatcctccaaagaat 48205663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 26984725 - 26984847
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatgctctaaactgtgaagaaattctaaatttataacaaggctttgcgtgctttt 115  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||||   |||  |||| |||||| ||||||||||||| || |||| ||||| |    
T  26984725 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgcttctaacaatgaacaaattccaaatttataacaaagccttgcctgcttgt 26984824  T
Q  116 catacttctgagcgatgtgggac 138  Q
    ||||||||||| |||||||||||    
T  26984825 catacttctgaccgatgtgggac 26984847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 26998798 - 26998920
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatgctctaaactgtgaagaaattctaaatttataacaaggctttgcgtgctttt 115  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||||   |||  |||| |||||| ||||||||||||| || |||| ||||| |    
T  26998798 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgcttctaacaatgaacaaattccaaatttataacaaagccttgcctgcttgt 26998897  T
Q  116 catacttctgagcgatgtgggac 138  Q
    ||||||||||| |||||||||||    
T  26998898 catacttctgaccgatgtgggac 26998920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 3461200 - 3461248
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  3461200 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 3461248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 11652450 - 11652498
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  11652450 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 11652498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 49106587 - 49106635
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  49106587 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 49106635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 49108691 - 49108739
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  49108691 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 49108739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 50077257 - 50077305
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  50077257 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 50077305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 140
Target Start/End: Complemental strand, 26982576 - 26982466
Alignment:
Q  31 acttgatcttagccaaaaggccgagaaag-gtatgct-ctaaactgt-gaagaaattctaaatttataacaaggctttgcgtgcttttcatacttctgag 127  Q
    |||||||||||||||| |||||||||||  ||||||| |||   ||| ||| |||||| ||||||||||||| ||||||| ||||| ||||| ||||||     
T  26982576 acttgatcttagccaagaggccgagaaaatgtatgctactag--tgtcgaacaaattccaaatttataacaaagctttgcctgcttgtcatatttctgac 26982479  T
Q  128 cgatgtgggacat 140  Q
    |||||||||||||    
T  26982478 cgatgtgggacat 26982466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 34496895 - 34496944
Alignment:
Q  89 atttataacaaggctttgcgtgcttttcatacttctgagcgatgtgggac 138  Q
    |||||||| ||||||||||||||||  ||||||| ||| |||||||||||    
T  34496895 atttataaaaaggctttgcgtgcttcccatacttttgaacgatgtgggac 34496944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 40054361 - 40054313
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  40054361 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 40054313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 41841210 - 41841258
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  41841210 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 41841258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 44879032 - 44878984
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  44879032 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 44878984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 44880889 - 44880937
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  44880889 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 44880937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 37679804 - 37679757
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtat 63  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||    
T  37679804 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtat 37679757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 10944457 - 10944505
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || |||||||||||||||||||| |||||||||||||    
T  10944457 aagaacagatactacacttgatcttagccaaaaggtcgagaaaggtatg 10944505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 37682106 - 37682058
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || |||||||||||||||||||||||||||| |||||    
T  37682106 aagaacagatactacacttgatcttagccaaaaggccgagaaatgtatg 37682058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 42872514 - 42872556
Alignment:
Q  22 agatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||| || |||| |||||||||||||||||||||||||||||    
T  42872514 agatactacacttaatcttagccaaaaggccgagaaaggtatg 42872556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 10791710 - 10791758
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  10791710 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 10791758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 10795948 - 10795996
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  10795948 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 10795996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 30521291 - 30521243
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||| |||||||||| |||||||||||||    
T  30521291 aagaacagatactacacttgatctcagccaaaaggtcgagaaaggtatg 30521243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 8875738 - 8875691
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtat 63  Q
    ||||||||||| || ||||||||||||||||||||||| |||| ||||    
T  8875738 aagaacagatattacacttgatcttagccaaaaggccgggaaatgtat 8875691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 1716510 - 1716558
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  1716510 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 1716558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 3643689 - 3643641
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  3643689 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 3643641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 7525017 - 7524969
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  7525017 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 7524969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 2841075 - 2841123
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  2841075 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 2841123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 8973361 - 8973313
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  8973361 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 8973313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 8979371 - 8979323
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  8979371 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 8979323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 9008070 - 9008022
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  9008070 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 9008022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 9023496 - 9023448
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  9023496 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 9023448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 9026835 - 9026787
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  9026835 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 9026787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 30732057 - 30732009
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  30732057 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 30732009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 32918129 - 32918081
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  32918129 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 32918081  T

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Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 43850098 - 43850050
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  43850098 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 43850050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 19232457 - 19232504
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtat 63  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||    
T  19232457 aagaacagatattacacttgatcttagccaaaaggccgagaaaggtat 19232504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 30734037 - 30733990
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtat 63  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||    
T  30734037 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtat 30733990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 8984742 - 8984694
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||| ||| || ||||||||||||||||||||||||||||||||||    
T  8984742 aagaacaaatactacacttgatcttagccaaaaggccgagaaaggtatg 8984694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 9020896 - 9020848
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || |||||||||||||||||||||||||||| |||||    
T  9020896 aagaacagatactacacttgatcttagccaaaaggccgagaaatgtatg 9020848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 9032102 - 9032054
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||| ||||||||||||||||||||||    
T  9032102 aagaacagatactacacttgatcttaaccaaaaggccgagaaaggtatg 9032054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 9030447 - 9030405
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaa 58  Q
    ||||||||||| || |||||||||||||||||||||| |||||    
T  9030447 aagaacagatactacacttgatcttagccaaaaggccaagaaa 9030405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 14652574 - 14652526
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  14652574 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 14652526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 14654398 - 14654446
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  14654398 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 14654446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 14662365 - 14662317
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  14662365 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 14662317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 14664189 - 14664237
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  14664189 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 14664237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 14667169 - 14667217
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  14667169 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 14667217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 14669767 - 14669815
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  14669767 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 14669815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 14674530 - 14674482
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  14674530 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 14674482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 14676681 - 14676633
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  14676681 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 14676633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 14679908 - 14679860
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  14679908 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 14679860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 14683799 - 14683751
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  14683799 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 14683751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 14706137 - 14706089
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  14706137 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 14706089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 14708627 - 14708579
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  14708627 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 14708579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 14716340 - 14716292
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  14716340 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 14716292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 28366257 - 28366305
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  28366257 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 28366305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 33988119 - 33988071
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  33988119 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 33988071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 38175588 - 38175636
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtatg 64  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  38175588 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 38175636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 14681648 - 14681601
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggtat 63  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||    
T  14681648 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtat 14681601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 11872539 - 11872585
Alignment:
Q  16 aagaacagatagtatacttgatcttagccaaaaggccgagaaaggta 62  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||    
T  11872539 aagaacagatagtacacttgatcttagtcaaaaggccgagaaaggta 11872585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 59
Target Start/End: Complemental strand, 37422203 - 37422175
Alignment:
Q  31 acttgatcttagccaaaaggccgagaaag 59  Q
    |||||||||||||||||||||||||||||    
T  37422203 acttgatcttagccaaaaggccgagaaag 37422175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 15758562 - 15758608
Alignment:
Q  17 agaacagatagtatacttgatcttagccaaaaggccgagaaaggtat 63  Q
    |||||||||| || ||||||||||||||||||||| |||||||||||    
T  15758562 agaacagatattacacttgatcttagccaaaaggctgagaaaggtat 15758608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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