View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14392_low_68 (Length: 249)
Name: NF14392_low_68
Description: NF14392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14392_low_68 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 233
Target Start/End: Original strand, 9433053 - 9433269
Alignment:
| Q |
17 |
cataggaagatccatgcgaacaagaagatccagtatcttcgatgaagataacagtagctgcacttttaccgaaagatccacctgtgtatcggaaaatctc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9433053 |
cataggaagatccatgcgaacaagaagatccagtatcttcgatgaagataacagtagctgcacttttaccgaaagatccacctgtgtatcggaaaatctc |
9433152 |
T |
|
| Q |
117 |
accgattccgtcgtcgacctccgtctcggtgaactcgcttccaagaatcacaaatccggaaaatcatcaacttctgaacaagaccttctagatctttctc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9433153 |
accgattccgtcgtcgacctccgtctcggtgaactcgcttccaagaatcacaaatccggaaaatcatcaacttctgaacaagaccttctagatctttctc |
9433252 |
T |
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| Q |
217 |
aagcttttagtgaatat |
233 |
Q |
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||||||||||||||||| |
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| T |
9433253 |
aagcttttagtgaatat |
9433269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 40 - 233
Target Start/End: Original strand, 3834070 - 3834264
Alignment:
| Q |
40 |
gaagatccagtatcttcgatgaagataacagtagctgcacttttaccgaaagatccacctgtgtatcggaaaatctcaccgattccgtcgtcgacctccg |
139 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||| ||||| ||||||||||||||||||| | |
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| T |
3834070 |
gaagatccagtatcttcgatgaagataacagtagttgcactttcaccgaaagatccacctgtgtatcgaaaagtctcatcgattccgtcgtcgacctctg |
3834169 |
T |
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| Q |
140 |
tctcggtgaactcgcttccaagaatcacaaatccggaaaatcatcaacttctgaac-aagaccttctagatctttctcaagcttttagtgaatat |
233 |
Q |
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| T |
3834170 |
tctcggcgaacttgcttccaagaataacaaatatggaaaatcatcaacttttgaactaagagcttctagatcgttctcaagcttttagtgaatat |
3834264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 17 - 233
Target Start/End: Original strand, 48677442 - 48677658
Alignment:
| Q |
17 |
cataggaagatccatgcgaacaagaagatccagtatcttcgatgaagataacagtagctgcacttttaccgaaagatccacctgtgtatcggaaaatctc |
116 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||| ||| |||| |
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| T |
48677442 |
cataggaagatccatgtgaacaagaagatttagtatcttcgatgaagataacggtagttgcactttcaccgaaagatccacctgtgtatcgaaaagtctc |
48677541 |
T |
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| Q |
117 |
accgattccgtcgtcgacctccgtctcggtgaactcgcttccaagaatcacaaatccggaaaatcatcaacttctgaacaagaccttctagatctttctc |
216 |
Q |
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|||||||||||| |||||||||||||||| |||| |||||||||||| |||||| |||||||||||||||||||||||||| |||| | ||||||||| |
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| T |
48677542 |
accgattccgtcatcgacctccgtctcggcaaacttgcttccaagaataacaaatatggaaaatcatcaacttctgaacaagagcttcaaaatctttctc |
48677641 |
T |
|
| Q |
217 |
aagcttttagtgaatat |
233 |
Q |
| |
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||||||||||||||||| |
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| T |
48677642 |
aagcttttagtgaatat |
48677658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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