View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14392_low_8 (Length: 598)
Name: NF14392_low_8
Description: NF14392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14392_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 1 - 498
Target Start/End: Complemental strand, 46613079 - 46612579
Alignment:
| Q |
1 |
aataatatgcaatatgacagatgagataacttttaaattttatttatttactgtccgtttatccattagtcgtaagaagatttcccgtggcttaaaaggt |
100 |
Q |
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| T |
46613079 |
aataatatgcaatatgacagatgagataacttttaaattttatttatttactgcccgtttatccattagtcgtaagaagatttcccgtggcttaaaaggt |
46612980 |
T |
|
| Q |
101 |
tcagggttcaagtcttaacaaagatgaaaatactaacataacaattaacata---acatttgttattaaaatacagtgatggaaacggaaagaaaaataa |
197 |
Q |
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| T |
46612979 |
tcagggctcaagtcttaacaaagatgaaaatactaacataacaattaacatattaacatttgttattaaaaaatagtgatggaaacggaaagaaaaataa |
46612880 |
T |
|
| Q |
198 |
gagtattttagttttcgcagcactttcgtatccctccctccaaaatcattctttgatggccttagctctccaattcttgcagaaaagaagtctaataatg |
297 |
Q |
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| T |
46612879 |
gagtattttagttttcgcagcactttcgtatccctccctccaaaatcattctttgatggtcttagctctccaattcttgcagaaaagaagtctaataata |
46612780 |
T |
|
| Q |
298 |
tgaaattcggttgagaagtaagtaaaacatattcaatgatagtttcagctaaaattcgaatttggattcttggacctccctcaaatttggaagtaatgaa |
397 |
Q |
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| T |
46612779 |
tgaaattcggttgagaagtaagtaaaacatattcaatgatagtttcagctaaaattcgaatttggattcttggatctccctcaaatttggaagtaatgaa |
46612680 |
T |
|
| Q |
398 |
atgttctgttttgatgaagatatccaactcttacatccctctccaaaccaactgataggtccaccttataacatctttgaaatagcaagataacgctttg |
497 |
Q |
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| T |
46612679 |
atgttctgttttgatgaagatatccaactcttacatccctctccaaactaactgataggtccaccttataacatctttgaaatagcaagataacgctttg |
46612580 |
T |
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| Q |
498 |
t |
498 |
Q |
| |
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| |
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| T |
46612579 |
t |
46612579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 152
Target Start/End: Complemental strand, 6611010 - 6610963
Alignment:
| Q |
105 |
ggttcaagtcttaacaaagatgaaaatactaacataacaattaacata |
152 |
Q |
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|||| ||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
6611010 |
ggtttaagtcttgacaaagagaaaaatactaacataacaattaacata |
6610963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 126 - 168
Target Start/End: Complemental strand, 26179584 - 26179542
Alignment:
| Q |
126 |
gaaaatactaacataacaattaacataacatttgttattaaaa |
168 |
Q |
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|||||||||||||||||||||||||||| |||| || |||||| |
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| T |
26179584 |
gaaaatactaacataacaattaacataatatttatttttaaaa |
26179542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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