View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14393_high_15 (Length: 379)
Name: NF14393_high_15
Description: NF14393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14393_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 17 - 364
Target Start/End: Complemental strand, 29234102 - 29233746
Alignment:
| Q |
17 |
aaaatagtggttttccttctggcgaggctgttctcgattgcttctatgtgtagtgtgtgaattaagattgatgacattgttgttgttcttgtacacttac |
116 |
Q |
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| T |
29234102 |
aaaatagtggttttccttctggcgaggctgttctcgattgcttctatgtgtcgtgtgtgaattaagattgatgacattgttgttgttcttgtacacttac |
29234003 |
T |
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| Q |
117 |
atgaatgt---------taggcaagccttttgttgatgtcttgaacgaagctggtgtgctttctggtatcaaggttgacaagggtaccattgagcttgcc |
207 |
Q |
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| T |
29234002 |
atgaatgtatttttttttaggcaagccttttgttgatgtcttgaacgaagctggtgtgcttcctggtatcaaggttgacaagggtaccgttgagcttgcc |
29233903 |
T |
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| Q |
208 |
ggaactgatggagaaaccaccactcagggtcttgatggacttggtgcttgttgtgctaagtactatgaagctggtgcacgtttcgctaaatggcgtgcag |
307 |
Q |
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| T |
29233902 |
ggaactgatggagaaaccaccactcagggtcttgatggacttggtgctcgttgtgctaagtactatgaagctggtgcacgtttcgctaaatggcgtgcag |
29233803 |
T |
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| Q |
308 |
tgcttaaaattggccccaatgagccatctgagcactctatccacgagaatgcctatg |
364 |
Q |
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| T |
29233802 |
tgcttaaaatcggccccaatgagccatctgagcactctatccacgagaatgcctatg |
29233746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 45 - 364
Target Start/End: Complemental strand, 29237827 - 29237496
Alignment:
| Q |
45 |
tgttctcgattgcttctatgtgtagtgtgtgaattaagattgatgacattgttgttgttcttgtacacttacatgaatgt------------taggcaag |
132 |
Q |
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| T |
29237827 |
tgttcttgattgcttctttttggggtgtgtgaattatgattgatgacattgttgttgttcttgtacacttacatgaatgtattatttttttttaggcaag |
29237728 |
T |
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| Q |
133 |
ccttttgttgatgtcttgaacgaagctggtgtgctttctggtatcaaggttgacaagggtaccattgagcttgccggaactgatggagaaaccaccactc |
232 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
29237727 |
ccttttgttgatgtcttgaacgaagctggtgtgcttcctggtatcaaggttgacaagggtaccgttgagcttgccggaactgatggagaaaccaccactc |
29237628 |
T |
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| Q |
233 |
agggtcttgatggacttggtgcttgttgtgctaagtactatgaagctggtgcacgtttcgctaaatggcgtgcagtgcttaaaattggccccaatgagcc |
332 |
Q |
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| T |
29237627 |
agggtcttgatggacttggtgctcgttgtgctaagtactatgaagctggtgcacgtttcgctaaatggcgtgcagtgcttaaaatcggccccaatgagcc |
29237528 |
T |
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| Q |
333 |
atctgagcactctatccacgagaatgcctatg |
364 |
Q |
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| T |
29237527 |
atctgagcactctatccacgagaatgcctatg |
29237496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 233
Target Start/End: Complemental strand, 26630142 - 26630045
Alignment:
| Q |
136 |
tttgttgatgtcttgaacgaagctggtgtgctttctggtatcaaggttgacaagggtaccattgagcttgccggaactgatggagaaaccaccactca |
233 |
Q |
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||||| ||||| ||||| ||||||| || ||| |||||||||||||||||||||| ||| |||| |||||||| || | ||||||||||| ||||| |
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| T |
26630142 |
tttgtggatgtgttgaagaaagctggagttcttcctggtatcaaggttgacaagggaaccgttgaacttgccggcacaaacggagaaaccacaactca |
26630045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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