View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14393_high_17 (Length: 335)
Name: NF14393_high_17
Description: NF14393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14393_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 14 - 319
Target Start/End: Complemental strand, 36367310 - 36367005
Alignment:
| Q |
14 |
agaaatataagcaggaactctcaagaagctattagaaatcattccctaaactctcttttattcttttctattacatcatcttttattacatctctcatgt |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36367310 |
agaaatataagcaggaactctcaagaagctattagaaatcattccctaaactctcttttattcttttctatcacatcatcttttattacatctctcatgt |
36367211 |
T |
|
| Q |
114 |
attgaaaatagataatgattttgtttccctttagttaatttgaatgaagactttaaataggaaattaaggttacaactgtagtnnnnnnngtgtctcaag |
213 |
Q |
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| T |
36367210 |
attgaaaatagataatgattttgtttccctttagttaatttgaatgaagactttaaataggaaattaaggttacaactgtagtaaaaaaagtgtctcaag |
36367111 |
T |
|
| Q |
214 |
aaactttatacatgtaatggaagatcttaacaactctgtagtaaagaaggtagatcataagatcaattgtccaatagttaaaaaccaagagatgttcctt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
36367110 |
aaactttatacatgtaatggaagatcttaacaactctgtagtaaagaaggtagatcataagatcgattgtccaatagttaaaaatcaagagatgttcctt |
36367011 |
T |
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| Q |
314 |
aagtac |
319 |
Q |
| |
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|||||| |
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| T |
36367010 |
aagtac |
36367005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 236 - 319
Target Start/End: Complemental strand, 36366973 - 36366890
Alignment:
| Q |
236 |
gatcttaacaactctgtagtaaagaaggtagatcataagatcaattgtccaatagttaaaaaccaagagatgttccttaagtac |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
36366973 |
gatcttaacaactctgtagtaaagaaggtagatcataagatcgattgtccaatagttaaaaaccaagagatgttccttaagtac |
36366890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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