View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14393_high_27 (Length: 255)
Name: NF14393_high_27
Description: NF14393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14393_high_27 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 32119502 - 32119269
Alignment:
| Q |
1 |
taagacagctactatactcttcaagaaaatgcacttttgcatctttcgtgcccccgtataatttttcaattctactccaagtggacggatctttaataga |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32119502 |
taagacagctcctatactcttcaagaaaatgcacttttacatctttcgcgcccccgtataatttttcaattctactccaagtggacagatctttaataga |
32119403 |
T |
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| Q |
101 |
ctatgtcatagttccgttctttccgtttcttgtcagttattttcaataattataactttggaataatttgtcgcttgtcttttttaccgctttcttcctc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32119402 |
gtatgtcatagttccgttctttccgtttcttgtcagttattttcaataattataactttggaataatttgtcgcttgtcttttttaccgctttcttcctc |
32119303 |
T |
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| Q |
201 |
tttgatgtcttgcaactttctacttaccaaagtg |
234 |
Q |
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|||| |||||||||| ||||||||||||||||| |
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| T |
32119302 |
tttgttgtcttgcaaggttctacttaccaaagtg |
32119269 |
T |
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Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 14374918 - 14375015
Alignment:
| Q |
13 |
tatactcttcaagaaaatgcacttttgcatctttcgtgcccccgtataatttttcaattctactccaagtggacggatctttaatagactatgtcata |
110 |
Q |
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| T |
14374918 |
tatactcttcaaaaaaatgcacttgtgtatctttcgcgcccccatgtcatttttcgattctactccaagtggacggatccttaatagagtatgtcata |
14375015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 14239273 - 14239144
Alignment:
| Q |
1 |
taagacagctactatactcttcaagaaaatgcacttttgcatctttcgtgcccccgtataatttttcaattctactccaagtggacggatctttaataga |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||| ||||| || |||||||| | | |||||| ||||||||||||||||||| ||| | |||||| |
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| T |
14239273 |
taagacagctactatactcttcaataaaatgcacttgtgcattttccgtgccccgatgtcattttttgattctactccaagtggacgaatcctcaataga |
14239174 |
T |
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| Q |
101 |
ctatgtcatagttccgttctttccgtttct |
130 |
Q |
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||||||||| | | || ||||||||||| |
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| T |
14239173 |
gtatgtcatactggcattttttccgtttct |
14239144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 41437122 - 41437013
Alignment:
| Q |
1 |
taagacagctactatactcttcaagaaaatgcacttttgcatctttcgtgcccccgtataatttttcaattctactccaagtggacggatctttaataga |
100 |
Q |
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|
|||||||||||||||||||||||| ||||||||||| ||||| || |||||||| | | ||||| |||||||||||||||| || ||| |||||||| |
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| T |
41437122 |
taagacagctactatactcttcaataaaatgcacttgtgcattttccgtgccccgatgtcgttttttgattctactccaagtggtcgaatccttaataga |
41437023 |
T |
|
| Q |
101 |
ctatgtcata |
110 |
Q |
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||||||||| |
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| T |
41437022 |
gtatgtcata |
41437013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 41450348 - 41450241
Alignment:
| Q |
1 |
taagacagctactatactcttcaagaaaatgcacttttgcatctttcgtgcccccgtataatttttcaattctactccaagtggacggatctttaataga |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||| || |||||||| | | ||||| |||||||||||||||| || ||| |||||||| |
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| T |
41450348 |
taagacagctactatactcttcaataaaatgcacttgtgcattttccgtgccccgatgtcgttttttgattctactccaagtggtcgaatccttaataga |
41450249 |
T |
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| Q |
101 |
ctatgtca |
108 |
Q |
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||||||| |
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| T |
41450248 |
gtatgtca |
41450241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 232
Target Start/End: Original strand, 14375032 - 14375120
Alignment:
| Q |
147 |
taattataactttggaataatttgtcgcttgtctttttt---accgctttcttcctctttgatgtcttgcaactttctacttaccaaag |
232 |
Q |
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||||||||||||||||||| ||||| |||||| |||||| | ||||||||||||||||| ||||||||| ||||||| ||||||| |
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| T |
14375032 |
taattataactttggaatactttgttgcttgtttttttttttatcgctttcttcctctttgttgtcttgcaggcttctactgaccaaag |
14375120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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