View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14393_high_5 (Length: 523)
Name: NF14393_high_5
Description: NF14393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14393_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 15 - 505
Target Start/End: Original strand, 2122654 - 2123149
Alignment:
| Q |
15 |
cataggacaggaaagtcataaccataggagaga--tgtagaccttattgatgcacatgaggtaactttgtgtattaaatgaaaagaatggtaaatcgacg |
112 |
Q |
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| T |
2122654 |
cataggacaggaaagtcataaccataggagagagatgtagaccttattgatgcacatgaagtaactttgtgtattaaatgaaaagaatggtaaatcgacg |
2122753 |
T |
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| Q |
113 |
tacttgagtttcatatttataggactctatgacactcat---ttgtaactcaaatctgaattacaactaatttacaaccaatgaggcagggacatctcta |
209 |
Q |
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| T |
2122754 |
tacttgagtttcatatttataggactctatgacactcatcatttgtaactcaaatctgaattacaactaatttacaaccaatgaggcagggacatctcta |
2122853 |
T |
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| Q |
210 |
gcattagccgtgtcgcagtgtccggcacacatcggtgtctgatactcacaccgatgtcctaaaatagnnnnnnnnnnnnnnnnnngctttgacacttctt |
309 |
Q |
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| T |
2122854 |
gcattagccgtgtcgcggtgtccagcacacatcggtgtctgatactcataccgatgtcctaaaatagtttttattttttatttttgctttgacacttctt |
2122953 |
T |
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| Q |
310 |
tcgagttctttgctaatgctcacaaccaaatcatcccttcatttcttttgtctgttaaaagaaaattgaatatagagcacctgagataaatcgagtgttg |
409 |
Q |
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| T |
2122954 |
tcgagttctttgctaatgctcacaaccaaatcatcccttcatttcttttttctgttaaaagaaaattgaatatagggcacctgagataaatagagtgttg |
2123053 |
T |
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| Q |
410 |
ggtttacgtgctcctgaggttattaatgttcaaagaagaagaacactacatgaattgccacactttgacggctgggatgatcttgtggctgggttt |
505 |
Q |
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| T |
2123054 |
ggtttacgtgctcctgaggttattaatgttcaaagaagaagaacactacatgaattgccacactttgatggctgggatgatcttgtgtctgggttt |
2123149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 313 - 504
Target Start/End: Original strand, 2094964 - 2095161
Alignment:
| Q |
313 |
agttctttgctaatgctcacaaccaa----atcatcccttcatttcttttgtctgttaaaagaaaattgaatatagag--cacctgagataaatcgagtg |
406 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| || || ||||||||||||||||| |
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| T |
2094964 |
agttctttgctaatgctcacaaccaagatcatcatcccttcatttcttttgtctgttgaaagaaaattgaatatatagggcagctgagataaatcgagtg |
2095063 |
T |
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| Q |
407 |
ttgggtttacgtgctcctgaggttattaatgttcaaagaagaagaacactacatgaattgccacactttgacggctgggatgatcttgtggctgggtt |
504 |
Q |
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| T |
2095064 |
ttgggtttacgtgctcctgaggttattaatgttcaaagaagaagaacactacatgaattgccaaactttgacggctgggacgatcttgtggctgggtt |
2095161 |
T |
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