View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14393_high_8 (Length: 443)
Name: NF14393_high_8
Description: NF14393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14393_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 19 - 426
Target Start/End: Original strand, 36662339 - 36662746
Alignment:
| Q |
19 |
gctactgtcttgaaacttttgtgatttgagcttggaactagctgattaagtgaagatggagaatgtgaagggttttttgccgaactcgggccactgatag |
118 |
Q |
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| T |
36662339 |
gctactgtcttgaaacttttgtgatttgagcttggaactagctgattaagtgaagatggagaatgtgaagggttttttgccgaactcgggccactaatag |
36662438 |
T |
|
| Q |
119 |
taggagtaacactccctccagtttgattattaagaaaagggttaccaacagtaataaccttcacaccatcatgaaaatccggtaacggagattcaagatt |
218 |
Q |
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| T |
36662439 |
taggactaacactccctccagtttgattattaagaaatgggttaccaacagtaataaccttcacaccatcatgaaaatccggtaacggagattcaagatt |
36662538 |
T |
|
| Q |
219 |
attgtcacttaaatccaacaacttcaatgttttcaatttagtaaaatcactaggaactgcgccggttatattatttccagcaagcctaatttcaagaagt |
318 |
Q |
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| T |
36662539 |
attgtcacttaaatccaacaacttcaatgatttcaatttagtaaaatcactaggaactgtgccggttatattatttccagcgagcctaatttcaagaagt |
36662638 |
T |
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| Q |
319 |
gactctaacttagcaagtgaaggacttaaactaccattaagcttatgttttggtagattaattatagatacagagtttgaattgcagcttaatccaaacc |
418 |
Q |
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| T |
36662639 |
gagtttaacttagcaagtgaaggacttaaactaccattaagcttatgttttggtagattaattatagatacagagtttgaattgcagcttaatccaaacc |
36662738 |
T |
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| Q |
419 |
atggtcct |
426 |
Q |
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| T |
36662739 |
atggtcct |
36662746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 138 - 362
Target Start/End: Complemental strand, 18572339 - 18572115
Alignment:
| Q |
138 |
agtttgattattaagaaaagggttaccaacagtaataaccttcacaccatcatgaaaatccggtaacggagattcaagattattgtcacttaaatccaac |
237 |
Q |
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| T |
18572339 |
agtttggttatcaaaaagagggttaccatcaataataaccttcacaccatcacgaaaattcggcaatggaggttccaaattgttatcactcaaatccaac |
18572240 |
T |
|
| Q |
238 |
aacttcaatgttttcaatttagtaaaatcactaggaactgcgccggttatattatttccagcaagcctaatttcaagaagtgactctaacttagcaagtg |
337 |
Q |
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| T |
18572239 |
aaactcaatgatttcaattccgtaaaattactaggaactttaccacttatattgtttcctgcaagcctaattgtaagtaatgaatctaacatagcaagtg |
18572140 |
T |
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| Q |
338 |
aaggacttaaactaccattaagctt |
362 |
Q |
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| T |
18572139 |
aaggactcaatgtaccattaagctt |
18572115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 215 - 276
Target Start/End: Complemental strand, 10613804 - 10613743
Alignment:
| Q |
215 |
gattattgtcacttaaatccaacaacttcaatgttttcaatttagtaaaatcactaggaact |
276 |
Q |
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| T |
10613804 |
gattattgtcacataaatccaacaacatcgatgatttcaatttagtaatatcactaggaact |
10613743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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