View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14393_low_12 (Length: 407)
Name: NF14393_low_12
Description: NF14393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14393_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 6023657 - 6024046
Alignment:
| Q |
1 |
atggtatacccccacgttaagaaagagtgtatttatagcttcatttgatgtttacttgtaccttccccctggtttgctctttaacatgactgattgatga |
100 |
Q |
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| T |
6023657 |
atggtatacccccacgttaagaaagagtgtatttatagctttatttgttgtttacttgtaccttccccctggtttgctctttaacatgactgattgatga |
6023756 |
T |
|
| Q |
101 |
cttatttttgtgtcattttgaccaacctttatacaacatcaccaagtttatctattgtctatctttatgaaatgcttgttatcttttnnnnnnnngtatt |
200 |
Q |
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| T |
6023757 |
cttatttttgtgtcattttgaccaacctttatacaacataaccaagtttatctattgtctatctttatgaaatgcttgttatctttcaaaaaaaagtatt |
6023856 |
T |
|
| Q |
201 |
ctactttataatgcctaattaacttaaacaatgagagaataaagttcagctgcttttaagatacacaaacaactaaaatatatgatattgataggtacat |
300 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6023857 |
ctcctttataatgcctaattaacttaaacaatgagagaataaagttcagctgcttttaagatacacaaacaactaaaatatatgatattgataggtacat |
6023956 |
T |
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| Q |
301 |
caaattgggatctaactcttctaaaataaacttatttttaagtgtatattaagtggtatcaatcgtttacaacaaattaaaggtatatat |
390 |
Q |
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||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||| |||| |
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| T |
6023957 |
caaattgggatctaactcttctaaaatgaacttattttaaagtgtatattaagcggtatcaatcgtttacatcaaattaaaggtagatat |
6024046 |
T |
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