View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14393_low_13 (Length: 394)

Name: NF14393_low_13
Description: NF14393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14393_low_13
NF14393_low_13
[»] chr2 (4 HSPs)
chr2 (1-382)||(38251600-38251981)
chr2 (1-382)||(43157561-43157942)
chr2 (1-63)||(38251996-38252058)
chr2 (1-63)||(43157484-43157546)
[»] chr1 (4 HSPs)
chr1 (1-382)||(11474985-11475366)
chr1 (1-382)||(11503025-11503406)
chr1 (1-63)||(11474908-11474970)
chr1 (1-63)||(11502948-11503010)
[»] chr3 (2 HSPs)
chr3 (342-382)||(49233770-49233810)
chr3 (342-382)||(49234341-49234381)
[»] chr8 (1 HSPs)
chr8 (343-382)||(14839257-14839296)
[»] chr7 (1 HSPs)
chr7 (343-382)||(27962394-27962433)
[»] chr6 (1 HSPs)
chr6 (40-96)||(18330745-18330801)
[»] chr4 (1 HSPs)
chr4 (3-31)||(48795544-48795572)


Alignment Details
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 38251981 - 38251600
Alignment:
Q  1 agcctctgtcatttgttcgtttctatttatgctagcataattttagagtgtgtaacaaatcttgattcttttgtttttggattgtgtgttaactctactg 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38251981 agcctctgtcatttgttcgtttctattt-tgctagcataattttagagtgtgtaacaaatcttgattcttttgtttttggattgtgtgttaactctactg 38251883  T
Q  101 gattgtagcctgttgaacttgactgtctgcccataggagtttgagcttttactgaatctggtgnnnnnnn-gggtgttctatgcatacttcaatgctggt 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||    
T  38251882 gattgtagcctgttgaacttgactgtctgcccataggagtttgagcttttactgaatctggtgttttttttgggtgttctatgcatacttcaatgctggt 38251783  T
Q  200 tcaaggtaattttctgtatatctcggatcaagtttgaggtaattctctacgtagttcaaagctggttttccgcctgtggactgttgtggtgctgcagcta 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38251782 tcaaggtaattttctgtatatctcggatcaagtttgaggtaattctctacgtagttcaaagctggttttccgcctgtggactgttgtggtgctgcagcta 38251683  T
Q  300 cgttgtggcatttcttccacccctaggttctgattagtatcattgtgttccagctgcaacatattggttttgttttcttctct 382  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38251682 cgttgtggcatttcttccacccctaggttctgattagtatcattgtgttccagctgcaacatattggttttgttttcttctct 38251600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 43157561 - 43157942
Alignment:
Q  1 agcctctgtcatttgttcgtttctatttatgctagcataattttagagtgtgtaacaaatcttgattcttttgtttttggattgtgtgttaactctactg 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43157561 agcctctgtcatttgttcgtttctattt-tgctagcataattttagagtgtgtaacaaatcttgattcttttgtttttggattgtgtgttaactctactg 43157659  T
Q  101 gattgtagcctgttgaacttgactgtctgcccataggagtttgagcttttactgaatctggtgnnnnnnn-gggtgttctatgcatacttcaatgctggt 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||    
T  43157660 gattgtagcctgttgaacttgactgtctgcccataggagtttgagcttttactgaatctggtgttttttttgggtgttctatgcatacttcaatgctggt 43157759  T
Q  200 tcaaggtaattttctgtatatctcggatcaagtttgaggtaattctctacgtagttcaaagctggttttccgcctgtggactgttgtggtgctgcagcta 299  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43157760 tcaaggtaattttctgtatatctcagatcaagtttgaggtaattctctacgtagttcaaagctggttttccgcctgtggactgttgtggtgctgcagcta 43157859  T
Q  300 cgttgtggcatttcttccacccctaggttctgattagtatcattgtgttccagctgcaacatattggttttgttttcttctct 382  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43157860 cgttgtggcatttcttccacccctaggttctgattagtatcattgtgttccagctgcaacatattggttttgttttcttctct 43157942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 38252058 - 38251996
Alignment:
Q  1 agcctctgtcatttgttcgtttctatttatgctagcataattttagagtgtgtaacaaatctt 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38252058 agcctctgtcatttgttcgtttctatttatgctagcataattttagagtgtgtaacaaatctt 38251996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 43157484 - 43157546
Alignment:
Q  1 agcctctgtcatttgttcgtttctatttatgctagcataattttagagtgtgtaacaaatctt 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43157484 agcctctgtcatttgttcgtttctatttatgctagcataattttagagtgtgtaacaaatctt 43157546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 11474985 - 11475366
Alignment:
Q  1 agcctctgtcatttgttcgtttctatttatgctagcataattttagagtgtgtaacaaatcttgattcttttgtttttggattgtgtgttaactctactg 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11474985 agcctctgtcatttgttcgtttctattt-tgctagcataattttagagtgtgtaacaaatcttgattcttttgtttttggattgtgtgttaactctactg 11475083  T
Q  101 gattgtagcctgttgaacttgactgtctgcccataggagtttgagcttttactgaatctggtgnnnnnnn-gggtgttctatgcatacttcaatgctggt 199  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||    
T  11475084 gattgtagcctgttgaacttgactgtctgcctataggagtttgagcttttactgaatctggtgttttttttgggtgttctatgcatacttcaatgctggt 11475183  T
Q  200 tcaaggtaattttctgtatatctcggatcaagtttgaggtaattctctacgtagttcaaagctggttttccgcctgtggactgttgtggtgctgcagcta 299  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11475184 tcaaggtaattttctgtatatatcggatcaagtttgaggtaattctctacgtagttcaaagctggttttccgcctgtggactgttgtggtgctgcagcta 11475283  T
Q  300 cgttgtggcatttcttccacccctaggttctgattagtatcattgtgttccagctgcaacatattggttttgttttcttctct 382  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11475284 cgttgtggcatttcttccacccctaggttctgattagtatcattgtgttccagctgcaacatattggttttgttttcttctct 11475366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 11503025 - 11503406
Alignment:
Q  1 agcctctgtcatttgttcgtttctatttatgctagcataattttagagtgtgtaacaaatcttgattcttttgtttttggattgtgtgttaactctactg 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11503025 agcctctgtcatttgttcgtttctattt-tgctagcataattttagagtgtgtaacaaatcttgattcttttgtttttggattgtgtgttaactctactg 11503123  T
Q  101 gattgtagcctgttgaacttgactgtctgcccataggagtttgagcttttactgaatctggtgnnnnnnn-gggtgttctatgcatacttcaatgctggt 199  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||    
T  11503124 gattgtagcctgttgaacttgactgtctgccaataggagtttgagcttttactgaatctggtgttttttttgggtgttctatgcatacttcaatgctggt 11503223  T
Q  200 tcaaggtaattttctgtatatctcggatcaagtttgaggtaattctctacgtagttcaaagctggttttccgcctgtggactgttgtggtgctgcagcta 299  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11503224 tcaaggtaattttctgtatatatcagatcaagtttgaggtaattctctacgtagttcaaagctggttttccgcctgtggactgttgtggtgctgcagcta 11503323  T
Q  300 cgttgtggcatttcttccacccctaggttctgattagtatcattgtgttccagctgcaacatattggttttgttttcttctct 382  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11503324 cgttgtggcatttcttccacccctaggttctgattagtatcattgtgttccagctgcaacatattggttttgttttcttctct 11503406  T

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Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 11474908 - 11474970
Alignment:
Q  1 agcctctgtcatttgttcgtttctatttatgctagcataattttagagtgtgtaacaaatctt 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11474908 agcctctgtcatttgttcgtttctatttatgctagcataattttagagtgtgtaacaaatctt 11474970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 11502948 - 11503010
Alignment:
Q  1 agcctctgtcatttgttcgtttctatttatgctagcataattttagagtgtgtaacaaatctt 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11502948 agcctctgtcatttgttcgtttctatttatgctagcataattttagagtgtgtaacaaatctt 11503010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 382
Target Start/End: Complemental strand, 49233810 - 49233770
Alignment:
Q  342 ttgtgttccagctgcaacatattggttttgttttcttctct 382  Q
    |||||||||||||||||||||||||||||  ||||||||||    
T  49233810 ttgtgttccagctgcaacatattggttttaatttcttctct 49233770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 382
Target Start/End: Complemental strand, 49234381 - 49234341
Alignment:
Q  342 ttgtgttccagctgcaacatattggttttgttttcttctct 382  Q
    |||||||||||||||||||||||||||||  ||||||||||    
T  49234381 ttgtgttccagctgcaacatattggttttaatttcttctct 49234341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 382
Target Start/End: Original strand, 14839257 - 14839296
Alignment:
Q  343 tgtgttccagctgcaacatattggttttgttttcttctct 382  Q
    ||||||||||||||||||||| |||||| |||||||||||    
T  14839257 tgtgttccagctgcaacatatcggttttattttcttctct 14839296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 382
Target Start/End: Complemental strand, 27962433 - 27962394
Alignment:
Q  343 tgtgttccagctgcaacatattggttttgttttcttctct 382  Q
    ||||||||||||||||||||| |||||| |||||||||||    
T  27962433 tgtgttccagctgcaacatatcggttttattttcttctct 27962394  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 18330801 - 18330745
Alignment:
Q  40 attttagagtgtgtaacaaatcttgattcttttgtttttggattgtgtgttaactct 96  Q
    ||||||| ||||| ||||||| ||||| |||||||||||  ||||||| ||||||||    
T  18330801 attttagtgtgtgcaacaaatgttgatgcttttgtttttttattgtgttttaactct 18330745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 31
Target Start/End: Original strand, 48795544 - 48795572
Alignment:
Q  3 cctctgtcatttgttcgtttctatttatg 31  Q
    |||||||||||||||||||||||||||||    
T  48795544 cctctgtcatttgttcgtttctatttatg 48795572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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