View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14393_low_2 (Length: 716)
Name: NF14393_low_2
Description: NF14393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14393_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 672; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 672; E-Value: 0
Query Start/End: Original strand, 10 - 697
Target Start/End: Complemental strand, 7762720 - 7762033
Alignment:
| Q |
10 |
agattatacttcagtggcagaaaagactatggaagatccttccctgagttcaatgttttaggacaccgaagtctacaacaatagaacaaatgttgtacat |
109 |
Q |
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| T |
7762720 |
agattttacttcagtggcagaaaagactatggaagatccttccctgagttcaatgtttcaggacaccgaagtatacaacaatagaacaaatgttgtacat |
7762621 |
T |
|
| Q |
110 |
atatataggatcaatagttccaaattatgatctttgtcaatatgattgttatatattttacttaattatactctctttaatgatatcattaataaaataa |
209 |
Q |
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| T |
7762620 |
atatataggatcaatagttccaaattatgatctttgtcaatatgattgttatatattttacttaattatactctctttaatgatatcattaataaaataa |
7762521 |
T |
|
| Q |
210 |
ccttttttctgagtttagcaatattgcacataatcattttatccccactttcttttgatttatcattcttattgtatttctgtacagctatgaatatgag |
309 |
Q |
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| T |
7762520 |
ccttttttctgagtttagcaatattgcacataatcattttatccccactttcttttgatttatcattcttattgtatttctgtacagctatgaatatgag |
7762421 |
T |
|
| Q |
310 |
tttattgagaagattgtcaaagagatctcagctaaactacctcccatacctttacaaattaaacacctagtcggactcgattctcgtttcgaacaggtga |
409 |
Q |
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| T |
7762420 |
tttattgagaagattgtcaaagagatctcagctaaactacctcccatacctttacaaattaaacacctagtcggactcgattctcgtttcgaacaggtga |
7762321 |
T |
|
| Q |
410 |
agtctcttattgataccaattctgatgatgctgtttgcatgttggaaatctatggaggtggtggaataggaaaaacaacgtttgcttggaatatatatag |
509 |
Q |
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| T |
7762320 |
agtctcttattgataccaattctgatgatgctgtttgcatgttggaaatctatggaggtggtggaataggaaaaacaacgtttgcttggaatatatatag |
7762221 |
T |
|
| Q |
510 |
caagatcagtcatcgatttgaagctactagttttcttgctaatgttagagaaaaatctaatgaaagcactaggggactggaagatctccaaaggacactt |
609 |
Q |
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| T |
7762220 |
caagatcagtcatcgatttgaagctactagttttcttgctaatgttagagaaaaatctaatgaaagcactaggggactggaagatctccaaaggacactt |
7762121 |
T |
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| Q |
610 |
ctgtctgagatgggtgtggagacacaaaccatgattggaagcacatctacaggaagctctgtaataaaatgcaagcttgctaacagaa |
697 |
Q |
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| T |
7762120 |
ctgtctgagatgggtgtggagacacaaaccatgattggaagcacatctacaggaagctctgtaataaaatgcaagctttctaacagaa |
7762033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 279 - 678
Target Start/End: Complemental strand, 7838859 - 7838463
Alignment:
| Q |
279 |
tattgtatttctgtacagctatgaatatgagtttattgagaagattgtcaaagagatctcagctaaactacctcccatacctttacaaattaaacaccta |
378 |
Q |
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|||||||||||| | ||||||||||| ||||||||||||||||||||| | ||| |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
7838859 |
tattgtatttctatgcagctatgaatctgagtttattgagaagattgtgagagacatctcagctaaactacctcccacgcctttacaaattaaacaccta |
7838760 |
T |
|
| Q |
379 |
gtcggactcgattctcgtttcgaacaggtgaagtctcttattgataccaattctgatgatgctgtttgcatgttggaaatctatggaggtggtggaatag |
478 |
Q |
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| T |
7838759 |
gttggactcgattctcgtttcgaacaggtgaaatctcttattaatattgattc---tgatgttgtttgcatgttgggaatttatggagctggtggaatag |
7838663 |
T |
|
| Q |
479 |
gaaaaacaacgtttgcttggaatatatatagcaagatcagtcatcgatttgaagctactagttttcttgctaatgttagagaaaaatctaatgaaagcac |
578 |
Q |
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| T |
7838662 |
gcaaaaccacatttgccttggatatatataacaagatcaggcgtcgatttgaagctgcttgttttcttggtaatgttagagaaaaatcaaatgaaaacac |
7838563 |
T |
|
| Q |
579 |
taggggactggaagatctccaaaggacacttctgtctgagatgggtgtggagacacaaaccatgattggaagcacatctacaggaagctctgtaataaaa |
678 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| | || ||||||||||| ||||||| |
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| T |
7838562 |
taggggactggaagatctccaaaggacacttctgtctgagatgggtgaggagacacaaaccatgatgggaagcacgtatagaggaagctctgaaataaaa |
7838463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 294 - 636
Target Start/End: Complemental strand, 7755328 - 7754986
Alignment:
| Q |
294 |
cagctatgaatatgagtttattgagaagattgtcaaagagatctcagctaaactacctcccatacctttacaaattaaacacctagtcggactcgattct |
393 |
Q |
| |
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||||||||||| |||||||||||| |||||||||| ||| ||||| |||||||||| || | ||||||||||| |||||||||||||| ||| || || |
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| T |
7755328 |
cagctatgaatctgagtttattgaaaagattgtcagagatatctctactaaactaccgaccgtgcctttacaaatcaaacacctagtcggcctcaatact |
7755229 |
T |
|
| Q |
394 |
cgtttcgaacaggtgaagtctcttattgataccaattctgatgatgctgtttgcatgttggaaatctatggaggtggtggaataggaaaaacaacgtttg |
493 |
Q |
| |
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|||||| |||||||||| ||| ||||||||| ||| ||| ||| | |||||||||||| ||| || |||| ||| |||||||| ||||| ||||| |
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| T |
7755228 |
cgtttcaaacaggtgaaatctattattgatatcaactctagtgaacgtatttgcatgttgggaatttacggagctggcggaataggcaaaacccagtttg |
7755129 |
T |
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| Q |
494 |
cttggaatatatatagcaagatcagtcatcgatttgaagctactagttttcttgctaatgttagagaaaaatctaatgaaagcactaggggactggaaga |
593 |
Q |
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| | | ||||||||| ||||||||| |||| |||||||||| | ||||||||||||||||||||||||||||| |||||||||| | | || |||||| | |
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| T |
7755128 |
ccttgcatatatataacaagatcagacatcaatttgaagctgcgagttttcttgctaatgttagagaaaaatcaaatgaaagcattggtggtctggaaaa |
7755029 |
T |
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| Q |
594 |
tctccaaaggacacttctgtctgagatgggtgtggagacacaa |
636 |
Q |
| |
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|||||||||||||||| || |||||| |||| || ||||||| |
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| T |
7755028 |
tctccaaaggacacttttgaatgagataggtgaggcgacacaa |
7754986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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