View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14393_low_25 (Length: 261)
Name: NF14393_low_25
Description: NF14393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14393_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 29237444 - 29237197
Alignment:
| Q |
1 |
ttgagcctgatatccttgttgatggacctcatgacattcaaaagtgtgctgctgttaccgagaaggtccttgcagcatgttacaaggccttgaatgacca |
100 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
29237444 |
ttgagcctgagatccttgttgatggacctcatgacattcaaaagtgtgctgctgttaccgagaaggtccttgcagcatgctacaaggccttgaatgacca |
29237345 |
T |
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| Q |
101 |
ccatgtcccccttgaaggcactctcttgaagcctaacatggttatccctggatctgatgcaccaaaggttgcacccgaggttgttgctgagcacaccgtt |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29237344 |
ccatgtcctccttgaaggcactctcttgaagcctaacatggttacccctggatctgatgcaccaaaggttgcacccgaggttgttgctgagcacaccgtt |
29237245 |
T |
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| Q |
201 |
agagctttgcagagaaccgtacctgctgcagtcccagctgttgttttc |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29237244 |
agagctttgcagagaaccgtacctgctgcagtcccagctgttgttttc |
29237197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 29233694 - 29233442
Alignment:
| Q |
1 |
ttgagcctgatatccttgttgatggacctcatgacattcaaaagtgtgctgctgttaccgagaaggtccttgcagcatgttacaaggccttgaatgacca |
100 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
29233694 |
ttgagcctgagatccttgttgatggacctcatgacattcaaaagtgtgctgctgttaccgagaaggtccttgcagcatgctacaaggcctagaatgacca |
29233595 |
T |
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| Q |
101 |
ccatgtcccccttgaaggcactctcttgaagcctaacatggttatccctggatctgatgcaccaaaggttgcacccgaggttgttgctgagcacaccgtt |
200 |
Q |
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| T |
29233594 |
ccatgtcctccttgaaggcactctcttgaagcctaacatggttacccctggatctgatgcaccaaaggttgcacccgaggttgttgctgagcacaccgtt |
29233495 |
T |
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| Q |
201 |
agagctttgcagagaaccgtacctgctgcagtcccagctgttgttttcatatc |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29233494 |
agagctttgcagagaaccgtacctgctgcagtcccagctgttgttttcttatc |
29233442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 144
Target Start/End: Complemental strand, 26629794 - 26629719
Alignment:
| Q |
69 |
cttgcagcatgttacaaggccttgaatgaccaccatgtcccccttgaaggcactctcttgaagcctaacatggtta |
144 |
Q |
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|||||||||||||||||||| | | |||||| ||||| | |||||||| ||||| ||||||||||| ||||||| |
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| T |
26629794 |
cttgcagcatgttacaaggctctaagtgaccatcatgttcttcttgaaggtactcttttgaagcctaatatggtta |
26629719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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