View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14393_low_28 (Length: 250)
Name: NF14393_low_28
Description: NF14393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14393_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 17354465 - 17354635
Alignment:
| Q |
1 |
cttcttaatggattttgtctcaaggacaagattgagtgtgtgagtgtgtagatggtcttacttctatttttaatgaatctgaaacattgattaaatctga |
100 |
Q |
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| T |
17354465 |
cttcttaatggattttgtctcaaggacaagattgagtgcgagaatgtgtagatggtcttacttctatttttaatgaatttgaaacattgattaaatctga |
17354564 |
T |
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| Q |
101 |
tggtttatttttcgtgcttcactggtgagggacttgatggagtgctcaccctctataatccacccaataatag |
173 |
Q |
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| T |
17354565 |
tggtttatttttcgtgcttcactggtgagggacttgatggagtgctcacc--ctataatccacccaataatag |
17354635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 17353897 - 17353853
Alignment:
| Q |
67 |
tttttaatgaatctgaaacattgattaaatctgatggtttatttt |
111 |
Q |
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| T |
17353897 |
tttttaatgaatctcaatcattgattaaatctgacggtttatttt |
17353853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 95
Target Start/End: Complemental strand, 14301801 - 14301715
Alignment:
| Q |
9 |
tggattttgtctcaaggacaagattgagtgtgtgagtgtgtagatggtcttacttctatttttaatgaatctgaaacattgattaaa |
95 |
Q |
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| T |
14301801 |
tggattttgtctcaaggacaagattgtgtgtgagaatgtgtagatgttcttacttttattcttaatgaatccaaaacatcgattaaa |
14301715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 135
Target Start/End: Complemental strand, 16731632 - 16731519
Alignment:
| Q |
22 |
aaggacaagattgagtgtgtgagtgtgtagatggtcttacttctatttttaatgaatctgaaacattgattaaatctgatggtttatttttcgtgcttca |
121 |
Q |
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| T |
16731632 |
aaggactagattgtgcgtgagaatgtgtaggtgatcttacttttattttgaatgaatctgaaacattgattaaatttaatggtttattttccctgctcca |
16731533 |
T |
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| Q |
122 |
ctggtgagggactt |
135 |
Q |
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| T |
16731532 |
ccagtgagggactt |
16731519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 14302132 - 14302207
Alignment:
| Q |
36 |
gtgtgtgagtgtgtagatggtcttacttctatttttaatgaatctgaaacattgattaaatctgatggtttatttt |
111 |
Q |
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| T |
14302132 |
gtgtgtaagtgtgtaactgttcttacttttgttttgaatgaatctgaatcattgattaaatttgacggtttatttt |
14302207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 14319592 - 14319551
Alignment:
| Q |
9 |
tggattttgtctcaaggacaagattgagtgtgtgagtgtgta |
50 |
Q |
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| T |
14319592 |
tggattttgtctcaaggacaagattgtgtgtgagaatgtgta |
14319551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 44410914 - 44411008
Alignment:
| Q |
18 |
tctcaaggacaagattgagtgtgtgagtgtgtagatggtcttacttctatttttaatgaatctgaaacattgattaaatctgatggtttattttt |
112 |
Q |
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||||||| ||||| ||| || || || |||||| ||| |||||| | ||||||||||||||| ||||||||||||||||| | ||||||||||| |
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| T |
44410914 |
tctcaagtacaagtttgtgtatgagaatgtgtaaatgatcttaccttaatttttaatgaatctaaaacattgattaaatctaacggtttattttt |
44411008 |
T |
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