View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14393_low_29 (Length: 232)
Name: NF14393_low_29
Description: NF14393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14393_low_29 |
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| [»] chr2 (4 HSPs) |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 16 - 232
Target Start/End: Original strand, 43157330 - 43157546
Alignment:
| Q |
16 |
caactttagttccccatgttgggtattttttggggtttgtcccannnnnnncctgctgaattatagcagcacttttatagcagcttctgccatacattga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43157330 |
caactttagttccccatgttgggtattttttggggtttgtcccatttttttcctgctgaattatagcagcacttttatagcagcttctgccatacattga |
43157429 |
T |
|
| Q |
116 |
ctttgtattttgaatggaatatacaatattttgctagcttaattgtgttatagcagcctctgtcatttgttcgtttctatttatgctagcataattttag |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43157430 |
ctttgtattttgaatggaatatacaatattttgctagcttaattgtgttatagcagcctctgtcatttgttcgtttctatttatgctagcataattttag |
43157529 |
T |
|
| Q |
216 |
agtgtgtaacaaatctt |
232 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
43157530 |
agtgtgtaacaaatctt |
43157546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 38252212 - 38251996
Alignment:
| Q |
16 |
caactttagttccccatgttgggtattttttggggtttgtcccannnnnnncctgctgaattatagcagcacttttatagcagcttctgccatacattga |
115 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38252212 |
caactttagttccccatggtgggtattttttggggtttgtcccatttttttcctgctgaattatagcagcacttttatagcagcttctgccatacattga |
38252113 |
T |
|
| Q |
116 |
ctttgtattttgaatggaatatacaatattttgctagcttaattgtgttatagcagcctctgtcatttgttcgtttctatttatgctagcataattttag |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38252112 |
ctttgtattttgaatggaatatacaatattttgctagcttaattgtgttatagcagcctctgtcatttgttcgtttctatttatgctagcataattttag |
38252013 |
T |
|
| Q |
216 |
agtgtgtaacaaatctt |
232 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
38252012 |
agtgtgtaacaaatctt |
38251996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 153 - 232
Target Start/End: Complemental strand, 38251998 - 38251920
Alignment:
| Q |
153 |
cttaattgtgttatagcagcctctgtcatttgttcgtttctatttatgctagcataattttagagtgtgtaacaaatctt |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
38251998 |
cttaattgtgttatagcagcctctgtcatttgttcgtttctattt-tgctagcataattttagagtgtgtaacaaatctt |
38251920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 153 - 232
Target Start/End: Original strand, 43157544 - 43157622
Alignment:
| Q |
153 |
cttaattgtgttatagcagcctctgtcatttgttcgtttctatttatgctagcataattttagagtgtgtaacaaatctt |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
43157544 |
cttaattgtgttatagcagcctctgtcatttgttcgtttctattt-tgctagcataattttagagtgtgtaacaaatctt |
43157622 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 16 - 232
Target Start/End: Original strand, 11474754 - 11474970
Alignment:
| Q |
16 |
caactttagttccccatgttgggtattttttggggtttgtcccannnnnnncctgctgaattatagcagcacttttatagcagcttctgccatacattga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11474754 |
caactttagttccccatgttgggtattttttggggtttgtcccatttttttcctgctgaattatagcagcacttttatagcagcttctgccatacattga |
11474853 |
T |
|
| Q |
116 |
ctttgtattttgaatggaatatacaatattttgctagcttaattgtgttatagcagcctctgtcatttgttcgtttctatttatgctagcataattttag |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11474854 |
ctttgtattttgaatggaatatacaatattttgctagcttaattgtgttatagcagcctctgtcatttgttcgtttctatttatgctagcataattttag |
11474953 |
T |
|
| Q |
216 |
agtgtgtaacaaatctt |
232 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
11474954 |
agtgtgtaacaaatctt |
11474970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 16 - 232
Target Start/End: Original strand, 11502794 - 11503010
Alignment:
| Q |
16 |
caactttagttccccatgttgggtattttttggggtttgtcccannnnnnncctgctgaattatagcagcacttttatagcagcttctgccatacattga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11502794 |
caactttagttccccatgttgggtattttttggggtttgtcccatttttttcctgctgaattatagcagcacttttatagcagcttctgccatacattga |
11502893 |
T |
|
| Q |
116 |
ctttgtattttgaatggaatatacaatattttgctagcttaattgtgttatagcagcctctgtcatttgttcgtttctatttatgctagcataattttag |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11502894 |
ctttgtattttgaatggaatatacaatattttgctagcttaattgtgttatagcagcctctgtcatttgttcgtttctatttatgctagcataattttag |
11502993 |
T |
|
| Q |
216 |
agtgtgtaacaaatctt |
232 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
11502994 |
agtgtgtaacaaatctt |
11503010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 28245376 - 28245191
Alignment:
| Q |
16 |
caactttagttccccatgttgggtattttttggggtttgtcccannnnnnncctgctgaattatagcagcacttttatagcagcttctgccatacattga |
115 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
28245376 |
caactttagttccccatggtgggtattttttggggtttgtcccatttttttcctgctgaattatagcagtagttttatagcagcttctgccatacattga |
28245277 |
T |
|
| Q |
116 |
ctttgtattttgaatggaatatacaatattttgctagcttaattgtgttatagcagcctctgtcatttgttcgtttctatttatgc |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
28245276 |
ctttgtattttgaatggaatatacaatattttgttagcctaattgtgttatagcagcctctgtcatttgtttgtttctatttatgc |
28245191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 153 - 232
Target Start/End: Original strand, 11474968 - 11475046
Alignment:
| Q |
153 |
cttaattgtgttatagcagcctctgtcatttgttcgtttctatttatgctagcataattttagagtgtgtaacaaatctt |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
11474968 |
cttaattgtgttatagcagcctctgtcatttgttcgtttctattt-tgctagcataattttagagtgtgtaacaaatctt |
11475046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 153 - 232
Target Start/End: Original strand, 11503008 - 11503086
Alignment:
| Q |
153 |
cttaattgtgttatagcagcctctgtcatttgttcgtttctatttatgctagcataattttagagtgtgtaacaaatctt |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11503008 |
cttaattgtgttatagcagcctctgtcatttgttcgtttctattt-tgctagcataattttagagtgtgtaacaaatctt |
11503086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 19307028 - 19306846
Alignment:
| Q |
19 |
ctttagttccccatgttgggtattttttggggtttgtcccannnnnnncctgctgaattatagcagcacttttatagcagcttctgccatacattgactt |
118 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| | | ||||||||||||||||||||||||||||| |
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|
| T |
19307028 |
ctttagttccccatggtgggtattttttggggtttgtcccatttttttcctgctgaattatagcagtagtgttatagcagcttctgccatacattgactt |
19306929 |
T |
|
| Q |
119 |
tgtattttgaatggaatatacaatattttgctagcttaattgtgttatagcagcctctgtcatttgttcgtttctatttatgc |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
19306928 |
tgtattttgaatggaatatacaatattttgctagcctaattgtgttatagcagcctctatcatttgttcgtttctatttatgc |
19306846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 10123603 - 10123418
Alignment:
| Q |
16 |
caactttagttccccatgttgggtattttttggggtttgtcccannnnnnncctgctgaattatagcagcacttttatagcagcttctgccatacattga |
115 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
10123603 |
caactttagttccccatggtgggtattttttgcggtttgtcccatttttttcctgctgaattatagcagtagttttatagcagcttctgccatacattga |
10123504 |
T |
|
| Q |
116 |
ctttgtattttgaatggaatatacaatattttgctagcttaattgtgttatagcagcctctgtcatttgttcgtttctatttatgc |
201 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
10123503 |
ctttgtattttgaatgcaatatacaatattttgttagcctaattgtgttatagcagcctctatcatttgttcgtttctatttatgc |
10123418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 25382813 - 25382994
Alignment:
| Q |
19 |
ctttagttccccatgttgggtattttttggggtttgtcccannnnnnncctgctgaattatagcagcacttttatagcagcttctgccatacattgactt |
118 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| | | |||||||||| |||||||||||||||||| |
|
|
| T |
25382813 |
ctttagttccccatggtgggtattttttggggtttgtcccatttttt-cctgctgaattatagcagtagtgttatagcagcctctgccatacattgactt |
25382911 |
T |
|
| Q |
119 |
tgtattttgaatggaatatacaatattttgctagcttaattgtgttatagcagcctctgtcatttgttcgtttctatttatgc |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
25382912 |
tgtattttgaatggaatatacaatattttgctagcctaattgtgttatagcagcctctgtcatttgttcgattctatttatgc |
25382994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 22490613 - 22490433
Alignment:
| Q |
19 |
ctttagttccccatgttgggtattttttggggtttgtcccannnnnnncctgctgaattatagcagcacttttatagcagcttctgccatacattgactt |
118 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||| | | ||||||||||||||||||||||||||||| |
|
|
| T |
22490613 |
ctttggttccccatggtgggtattttttggggtttgtcccatttttt-cctgctgaattatagcagtagtgttatagcagcttctgccatacattgactt |
22490515 |
T |
|
| Q |
119 |
tgtattttgaatggaatatacaatattttgctagcttaattgtgttatagcagcctctgtcatttgttcgtttctatttatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
22490514 |
tgtattttgaatggaatatacaatattttgctagcctaattgtgttatagcagcctctgtcatttgttcgtttgtatttatg |
22490433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 48795389 - 48795572
Alignment:
| Q |
20 |
tttagttccccatgttgggtattttttggggtttgtcccannnnnnncctgctgaattatagcagcactttt---atagcagcttctgccatacattgac |
116 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||| | | || |||||||| |||||||||||||||| |
|
|
| T |
48795389 |
tttagttccccatggtgggtattttttggggtttgtcccatttttttcctactgaattatagcagtagtgttgttatagcagcctctgccatacattgac |
48795488 |
T |
|
| Q |
117 |
tttgtattttgaatggaatatacaatattttgctagcttaattgtgttatagcagcctctgtcatttgttcgtttctatttatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
48795489 |
tttgtattttgaatggaatatacaatattgtgctagcctaattgtgttataacaacctctgtcatttgttcgtttctatttatg |
48795572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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