View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14393_low_3 (Length: 645)
Name: NF14393_low_3
Description: NF14393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14393_low_3 |
 | |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 583; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 1 - 631
Target Start/End: Complemental strand, 26642677 - 26642042
Alignment:
| Q |
1 |
agaacaagagcaatacattaagtactatacttgcaacattcactacttataaaaggatatccactttgcaaaaggatctcatattactacttataaaaag |
100 |
Q |
| |
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||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26642677 |
agaacaacaacaatatattaagtactatacttgcaacattcactacttataaaaggatatccactttgcaaaaggatctcatattactacttaaaaaaag |
26642578 |
T |
|
| Q |
101 |
tagtgaaggatatccactttggaaagagtgtagatgcataggaacaaagatcacaatatctagtattaataatagcaacaatcataataggaacaaaaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26642577 |
tagtgaaggatatccactttggaaagagtgtagatgcataggaacaaagatcacaatatctagtattaataatagcaacaatcataataggaacaaaaac |
26642478 |
T |
|
| Q |
201 |
agaacaactctgtcttttcagcaaaaagaacatttgttttccagaacaacacaacagttttcatactccctctaaacttgtcgtcattctttttgtctct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26642477 |
agaacaactctgtcttttcagcaaaaagaacatttgttttccagaacaacacaacagttttcatactccctctaaacttgtcgtcattctttttgtctct |
26642378 |
T |
|
| Q |
301 |
tttagtttcaatcacaatatctcatcacttccaacaatatgcatta-ttaagtttcatgaaattcattttatttgttgtttccttttgtgtatgcctatt |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26642377 |
tttagtttcaatcacaatatctcatcacttccaacaatatgcattatttaagtttcatgaaattcattttatttgttgtttccttttgtgtatgcctatt |
26642278 |
T |
|
| Q |
400 |
gcatccaactac----taacaacttgattaaaaggtttcaatagcgactgtacgtagtattttgccattaaaagaacaaatctttagtctttgtgcttct |
495 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26642277 |
gcatccaactactaattaacaacttgattaaaaggtttcaatagcgactgtacgtagtattttgccattaaaagaacaaatctttagtctttgtgcttct |
26642178 |
T |
|
| Q |
496 |
gctagaagaagattgatatacaatccttagatatgtgtcatctggtactatcacgagatagaaatgattgacattgttaacgaaactacatgtgtagcca |
595 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
26642177 |
gctagaagaagtttgatatacaatccttagatatgtgtcatctggtactatcacgagatagaaatgattgacattgttaacgaaactacatgtgtatcca |
26642078 |
T |
|
| Q |
596 |
tttataaaaagattgcctatgaatttaaaatctata |
631 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
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| T |
26642077 |
tttataaaaagattgcctacgaatttaaaatctata |
26642042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 1 - 631
Target Start/End: Complemental strand, 26748643 - 26748008
Alignment:
| Q |
1 |
agaacaagagcaatacattaagtactatacttgcaacattcactacttataaaaggatatccactttgcaaaaggatctcatattactacttataaaaag |
100 |
Q |
| |
|
||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
26748643 |
agaacaacaacaatatattaagtactatacttgcaacattcactacttataaaaggatatccactttgcaaaaggatctcatattactacttaaaaaaag |
26748544 |
T |
|
| Q |
101 |
tagtgaaggatatccactttggaaagagtgtagatgcataggaacaaagatcacaatatctagtattaataatagcaacaatcataataggaacaaaaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26748543 |
tagtgaaggatatccactttggaaagagtgtagatgcataggaacaaagatcacaatatctagtattaataatagcaacaatcataataggaacaaaaac |
26748444 |
T |
|
| Q |
201 |
agaacaactctgtcttttcagcaaaaagaacatttgttttccagaacaacacaacagttttcatactccctctaaacttgtcgtcattctttttgtctct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26748443 |
agaacaactctgtcttttcagcaaaaagaacatttgttttccagaacaacacaacagttttcatactccctctaaacttgtcgtcattctttttgtctct |
26748344 |
T |
|
| Q |
301 |
tttagtttcaatcacaatatctcatcacttccaacaatatgcatta-ttaagtttcatgaaattcattttatttgttgtttccttttgtgtatgcctatt |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26748343 |
tttagtttcaatcacaatatctcatcacttccaacaatatgcattatttaagtttcatgaaattcattttatttgttgtttccttttgtgtatgcctatt |
26748244 |
T |
|
| Q |
400 |
gcatccaactac----taacaacttgattaaaaggtttcaatagcgactgtacgtagtattttgccattaaaagaacaaatctttagtctttgtgcttct |
495 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26748243 |
gcatccaactactaattaacaacttgattaaaaggtttcaatagcgactgtacgtagtattttgccattaaaagaacaaatctttagtctttgtgcttct |
26748144 |
T |
|
| Q |
496 |
gctagaagaagattgatatacaatccttagatatgtgtcatctggtactatcacgagatagaaatgattgacattgttaacgaaactacatgtgtagcca |
595 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
26748143 |
gctagaagaagtttgatatacaatccttagatatgtgtcatctggtactatcacgagatagaaatgattgacattgttaacgaaactacatgtgtatcca |
26748044 |
T |
|
| Q |
596 |
tttataaaaagattgcctatgaatttaaaatctata |
631 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
|
|
| T |
26748043 |
tttataaaaagattgcctacgaatttaaaatctata |
26748008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 264 - 386
Target Start/End: Original strand, 27419823 - 27419941
Alignment:
| Q |
264 |
tactccctctaaacttgtcgtcattctttttgtctcttttagtttcaatcacaatatctcatcacttccaacaatatgcattattaagtttcatgaaatt |
363 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||| |||||| |||||||||||||||||| |||||||||||| |
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| T |
27419823 |
tactccctctaaacttgtcatcattctttttgtctgattt----tcaatcacaatatctccccacttcaaacaatatgcattattaactttcatgaaatt |
27419918 |
T |
|
| Q |
364 |
cattttatttgttgtttcctttt |
386 |
Q |
| |
|
||||||| |||||||||| |||| |
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|
| T |
27419919 |
cattttacttgttgtttcgtttt |
27419941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 26621034 - 26621004
Alignment:
| Q |
15 |
acattaagtactatacttgcaacattcacta |
45 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
26621034 |
acattaagtactatacttgcaacattcacta |
26621004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 26727013 - 26726983
Alignment:
| Q |
15 |
acattaagtactatacttgcaacattcacta |
45 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
26727013 |
acattaagtactatacttgcaacattcacta |
26726983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 264 - 386
Target Start/End: Complemental strand, 67540 - 67422
Alignment:
| Q |
264 |
tactccctctaaacttgtcgtcattctttttgtctcttttagtttcaatcacaatatctcatcacttccaacaatatgcattattaagtttcatgaaatt |
363 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||| |||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
67540 |
tactccctctaaacttgtcatcattctttttgtctgattt----tcaatcacaatatctccccacttcaaacaatatgcattattaactttcatgaaatt |
67445 |
T |
|
| Q |
364 |
cattttatttgttgtttcctttt |
386 |
Q |
| |
|
||||||| |||||||||| |||| |
|
|
| T |
67444 |
cattttacttgttgtttcgtttt |
67422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 291 - 365
Target Start/End: Complemental strand, 18684311 - 18684237
Alignment:
| Q |
291 |
ttttgtctcttttagtttcaatcacaatatctcatcacttccaacaatatgcattattaagtttcatgaaattca |
365 |
Q |
| |
|
|||| ||||||| | |||| || |||||||||| |||||||||| |||||||||| ||| |||||||||||||| |
|
|
| T |
18684311 |
ttttctctctttcaatttctataacaatatctcgccacttccaacgatatgcattactaactttcatgaaattca |
18684237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 582 - 631
Target Start/End: Original strand, 5087970 - 5088019
Alignment:
| Q |
582 |
tacatgtgtagccatttataaaaagattgcctatgaatttaaaatctata |
631 |
Q |
| |
|
||||||| | |||||||||||||||||||||| |||||||| ||||||| |
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|
| T |
5087970 |
tacatgtatggccatttataaaaagattgcctctgaatttagtatctata |
5088019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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