View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14393_low_30 (Length: 220)
Name: NF14393_low_30
Description: NF14393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14393_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 17354397 - 17354198
Alignment:
| Q |
7 |
aattcacaagaagtttaaatcagattatgatattggttattcatccttcaaaactaagacgtttaagaataataatagtgttaatataatgatggtcaag |
106 |
Q |
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| T |
17354397 |
aattcacaagaagtttaaatcagattttgatattggttattcatccttcaaaactaagacgtttaagaataacaatagtgttaatataatgatggtcaag |
17354298 |
T |
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| Q |
107 |
gattttggtaccatgttatggaaaataaaatttatgagtccaattggtttcggagaa-ttttcatcagggcagcaacaattggggaacatacaagaacat |
205 |
Q |
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| T |
17354297 |
gtttttgctaccatgttatggaaaataaaatttatgagtccaattggtttcgaagaattttttatcaggacagcaacacttgatgaacatataagaacat |
17354198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 16731737 - 16731912
Alignment:
| Q |
1 |
gagagaaattcacaagaagtttaaatcagattatgatat--tggttattcatccttcaaaac-taagacgtttaagaataataatagtgttaatat---- |
93 |
Q |
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| T |
16731737 |
gagagcaattcacgagaagattaaatcagattcagatatagtggttattcatccattagaacatgagacatttagaaataacaatagtgttaatattaat |
16731836 |
T |
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| Q |
94 |
aatgatggtcaaggattttggtaccatgttatggaaaataaaatttatgagtccaattggtttcggagaattttcat |
170 |
Q |
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| T |
16731837 |
aatgatggtgaaggtttttgctctc-tattatggaaaataaaatttatgcgtcccatttgttttggagaattttcat |
16731912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 93 - 171
Target Start/End: Complemental strand, 44410428 - 44410350
Alignment:
| Q |
93 |
taatgatggtcaaggattttggtaccatgttatggaaaataaaatttatgagtccaattggtttcggagaattttcatc |
171 |
Q |
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| T |
44410428 |
taatgatgatcaaggtttttgttctcatgttattgaaaataaaatttataagtcccgtttgtttcgaagaattttcatc |
44410350 |
T |
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