View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14393_low_4 (Length: 644)
Name: NF14393_low_4
Description: NF14393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14393_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 412; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 207 - 626
Target Start/End: Original strand, 29740850 - 29741269
Alignment:
| Q |
207 |
aatttctcttgcttacaatgtgttcgatgaaatgcctctttcactcatccaattgaatctctaacttttcataaccatagcttcttcttccaaatgcctc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29740850 |
aatttctcttgcttacaatgtgttcgatgaaatgcctctttcactcatccaattgaatctctaacttttcataaccatagcttcttcttccaaatgcctc |
29740949 |
T |
|
| Q |
307 |
ccaacatcacactcaaaccctcttcatcttcttccccattcaaaaacatcaccttccacaacaaaccaccaattccaacacaacccattgatcactcaca |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29740950 |
ccaacatcacactcaaaccctcttcatcttcttccccattcaaaaacatcaccttccacaacaaaccaccaattccaacacaacccattgatcactcaca |
29741049 |
T |
|
| Q |
407 |
cctctcacaactcctctcaaaacccaactccgattgggtcattttactcaaccaccaactccacaccaacaaattactactcacacccccttcactctca |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
29741050 |
cctctcacaactcctctcaaaacccaactccgattgggtcattttactcaaccaccaactccacaccaacaaattactactcacacccccctcactctca |
29741149 |
T |
|
| Q |
507 |
accattttccaaaacattcataacccattacactccatcaaattctacacatgggtttcatccatcaactcttcattggtaaacaactcttccattcacc |
606 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29741150 |
actattttccaaaacattcataacccattacactccatcaaattctacacatgggtttcatccatcaactcttcattggtaaacaactcttccattcacc |
29741249 |
T |
|
| Q |
607 |
gcattttaggtaacaccttg |
626 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
29741250 |
gcattttaggtaacaccttg |
29741269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 65 - 187
Target Start/End: Original strand, 29740476 - 29740598
Alignment:
| Q |
65 |
aatttgcttaacagtggtttttgtttggtttaagatcttatataaatcatctacatagttcaatcaagtattatttgaatatcagcttaatggggctttg |
164 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29740476 |
aatttgcttaacagtggtttttgttaggtttaagatcttatataaatcatctacatagttcaatcaagtattatttgaatatcagcttaatggggctttg |
29740575 |
T |
|
| Q |
165 |
aatcttacaggaattactggttt |
187 |
Q |
| |
|
||||||||| ||||||||||||| |
|
|
| T |
29740576 |
aatcttacaagaattactggttt |
29740598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 306 - 558
Target Start/End: Complemental strand, 29898492 - 29898232
Alignment:
| Q |
306 |
cccaacatcacactcaaaccctcttcatcttcttccccattcaaaaacatcacctt--cca-------caacaaaccaccaattccaacacaacccattg |
396 |
Q |
| |
|
||||||||||||| |||||||||||||||||| | |||||||||||||| |||| ||| ||| |||||||| | |||||||| |||| ||| |
|
|
| T |
29898492 |
cccaacatcacacgcaaaccctcttcatcttcacctgcattcaaaaacatctccttcaccaagaacagcaagaaaccacctaatccaacactacccgttg |
29898393 |
T |
|
| Q |
397 |
atcactcacacctctcacaactcctctcaaaacccaactccgattgggtcattttactcaaccaccaactccacaccaacaaattactactcacaccccc |
496 |
Q |
| |
|
| ||| ||||| |||| || ||||| || |||||||| ||| |||| ||| ||||||||||| ||| ||| | ||||| ||||| |||||| |||| |
|
|
| T |
29898392 |
a-cacccacacatctcgcagctcctttccaaacccaatgccgtttggaccatcttactcaaccagcaaatccgttcaaacaagttactcctcacaacccc |
29898294 |
T |
|
| Q |
497 |
ttcactctcaaccattttccaaaacattcataacccattacactccatcaaattctacacat |
558 |
Q |
| |
|
||| |||||||||| ||||| ||| || ||| ||||||||||||||||| ||||||| |
|
|
| T |
29898293 |
ttcgttctcaaccatcttccaggccatccaaaactggttacactccatcaaattttacacat |
29898232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University