View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14393_low_6 (Length: 483)
Name: NF14393_low_6
Description: NF14393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14393_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 10 - 437
Target Start/End: Original strand, 22514816 - 22515245
Alignment:
| Q |
10 |
aagaaaatacaaaagaaaaagccaaacaatgttattcataaaatcagacgtattctgtataatattaaatgtaatactctaatatata--gggtaggtaa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
22514816 |
aagaaaatacaaaagaaaaagccaaacaatgttattcataaaatcagacgtattctgtataatattaaatgtaatactctaatatatatagggtaggtaa |
22514915 |
T |
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| Q |
108 |
acatacttttttgactcgataagnnnnnnnnnnnnntaactgagtaacataacccccttttattccctctggctgttacagcaggtaaacttaaacaatg |
207 |
Q |
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|||||| ||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22514916 |
acatacacttttgactcaataagaaaaataaaaaaataaccgagtaacataacccccttttattccctctggctgttacagcaggtaaacttaaacaatg |
22515015 |
T |
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| Q |
208 |
actactgcttatgtaacatttcaccatggcagaggagtccaccattatcatagagaaagtaacggttaagaaaaataccaggactcggttattcgattca |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
22515016 |
actactgcttatgtaacatttcaccatggcagaggagtccaccattatcatagagaaagtaacggttaagaaaaatgccaggactaggttattcgattca |
22515115 |
T |
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| Q |
308 |
tttagaataagcaagggatatttttatacctgatcaaaaggaggttgtggcttgcccctgcagaagtttgaaagagtccacgaagcttttctcagcatag |
407 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22515116 |
tttagaataagcaatggatatttttatacctgatcaaaaggaggttgtggcttgcccctgcagaagtttgaaagagtccacgaagcttttctcagcatag |
22515215 |
T |
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| Q |
408 |
aaagcttggcatgctcgttgacttgtgcca |
437 |
Q |
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| T |
22515216 |
aaagcttggcatgctcgttgacttgtgcca |
22515245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 286 - 460
Target Start/End: Original strand, 37310956 - 37311130
Alignment:
| Q |
286 |
caggactcggttattcgattcatttagaataagcaagggatatttttatacctgatcaaaaggaggttgtggcttgcccctgcagaagtttgaaagagtc |
385 |
Q |
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||||||| |||||||||||||| ||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
37310956 |
caggactaagttattcgattcatagagaataagcaacgcatatttttatacctgatcaaaaggaggctgtggcttgcccctgcagaagtttgaaagtgtc |
37311055 |
T |
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| Q |
386 |
cacgaagcttttctcagcatagaaagcttggcatgctcgttgacttgtgccaaaagaggaaccaaagccctgtga |
460 |
Q |
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|| | ||| |||||||||||||||||||| |||||||| || | |||||||||||||||||||||||||| |||| |
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| T |
37311056 |
caggtagcatttctcagcatagaaagcttcgcatgctcattcaattgtgccaaaagaggaaccaaagccccgtga |
37311130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 10 - 120
Target Start/End: Original strand, 37310842 - 37310952
Alignment:
| Q |
10 |
aagaaaatacaaaagaaaaagccaaacaatgttattcataaaatcagacgtattctgtataatattaaatgtaatactctaatatatagggtaggtaaac |
109 |
Q |
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|||||| |||| | ||||||||||||||||||||| ||||| |||||| ||||| |||||||||||||||||||||||||||| ||||||||| |||| | |
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| T |
37310842 |
aagaaagtacagatgaaaaagccaaacaatgttatccataagatcagaagtattatgtataatattaaatgtaatactctaatctatagggtaagtaacc |
37310941 |
T |
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| Q |
110 |
atacttttttg |
120 |
Q |
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||||| ||||| |
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| T |
37310942 |
atactcttttg |
37310952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 330 - 453
Target Start/End: Original strand, 46155148 - 46155271
Alignment:
| Q |
330 |
tttatacctgatcaaaaggaggttgtggcttgcccctgcagaagtttgaaagagtccacgaagcttttctcagcatagaaagcttggcatgctcgttgac |
429 |
Q |
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|||||||||||||||||| |||||||||||| ||||||||||||||||| || ||||| | || ||||| ||||||||||| || |||||||| || | |
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| T |
46155148 |
tttatacctgatcaaaagcaggttgtggctttcccctgcagaagtttgagagtgtccatgtggcatttctaagcatagaaagtttagcatgctcattcaa |
46155247 |
T |
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| Q |
430 |
ttgtgccaaaagaggaaccaaagc |
453 |
Q |
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||| ||||| ||||||| |||||| |
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| T |
46155248 |
ttgcgccaacagaggaagcaaagc |
46155271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 334 - 423
Target Start/End: Complemental strand, 13401627 - 13401538
Alignment:
| Q |
334 |
tacctgatcaaaaggaggttgtggcttgcccctgcagaagtttgaaagagtccacgaagcttttctcagcatagaaagcttggcatgctc |
423 |
Q |
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|||||||||||| ||||||||||||||||||||||| |||||||| |||||||| | || ||||||||||| |||||||| || ||||| |
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| T |
13401627 |
tacctgatcaaatggaggttgtggcttgcccctgcaaaagtttgacagagtccatgtggcatttctcagcattgaaagctttgcctgctc |
13401538 |
T |
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