View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14393_low_7 (Length: 460)
Name: NF14393_low_7
Description: NF14393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14393_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 16 - 453
Target Start/End: Original strand, 33046267 - 33046702
Alignment:
| Q |
16 |
cagacatatatgttggcaacatacatgatgttcttgtcgggcatcccattacagattacataatttaattgtcacgtgtgtatcatatgactagggtacc |
115 |
Q |
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|||| |||||||||||||||||||||| |||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| || |
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| T |
33046267 |
cagaaatatatgttggcaacatacatggtgtttttgtcgggcatcccattacagtttacacaatttaattgtcacgtgtgtatcatatgactaggggtcc |
33046366 |
T |
|
| Q |
116 |
aatggaagcaaattttctactataacagcaggtgttgtaatgcatgtgagccatccaatcaaattttagcgactgagatcaaagtgtgttaaaactgact |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
33046367 |
aatggaagcaaattttctactataacagcaggtgttgtaatgcatgtgagccattcgatcaaattttagcgactgagatcaaagtgtgttaaaactgaca |
33046466 |
T |
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| Q |
216 |
gaacaatctaaaccgttggatcaatgttcaatgactgagatcaaccattacgtgaaactgtgtaaaacagttacaacagggaatccaggtctggggttca |
315 |
Q |
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| T |
33046467 |
gaacaatctaaaccgttggatcaatgttcaatgactgagatcaaccat--cgtgaaactgcgtaaaacagttacaacaggagatccaggtctagggttca |
33046564 |
T |
|
| Q |
316 |
atattgtcccaagagagaacatttttgtacctttggaaactaggccttcttggataaggaagtccccactacaacttattggacaaaggaccattcaaat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33046565 |
atattgtcccaagagagaacatttttgtacctttggaaactaggccttcttggataaggaagtccccactacaacttattggacaaaggaccattcaaat |
33046664 |
T |
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| Q |
416 |
tgtagatatattttccaagaaaaatattgtagaattat |
453 |
Q |
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| T |
33046665 |
tgtagatatattttccaagaaaaatattgtagaattat |
33046702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 33046088 - 33046151
Alignment:
| Q |
23 |
atatgttggcaacatacatgatgttcttgtcgggcatcccattacagattacataatttaattg |
86 |
Q |
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|||| ||||||||||||||||||||||||| |||||| |||||||| ||||| |||||||||| |
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| T |
33046088 |
atatattggcaacatacatgatgttcttgtggggcattccattacattttacacaatttaattg |
33046151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 33045902 - 33045968
Alignment:
| Q |
21 |
atatatgttggcaacatacatgatgttcttgtcgggcatcccattacagattacataatttaattgt |
87 |
Q |
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||||||||| ||||| |||||||||||||||| |||||| |||||||| ||||| ||||||||||| |
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| T |
33045902 |
atatatgtttgcaacctacatgatgttcttgtggggcattccattacattttacacaatttaattgt |
33045968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 9e-31; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 138 - 306
Target Start/End: Original strand, 11234988 - 11235156
Alignment:
| Q |
138 |
taacagcaggtgttgtaatgcatgtgagccatccaatcaaattttagcgactgagatcaaagtgtgttaaaactgactgaacaatctaaaccgttggatc |
237 |
Q |
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|||||||| ||||||||| ||||||| |||||| ||||||||| | | ||| ||| ||||||||| ||||||||| ||||||||||||| |||||||| |
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| T |
11234988 |
taacagcaagtgttgtaagacatgtgatccatccgatcaaatttcaatggctgggattaaagtgtgtgaaaactgacagaacaatctaaactgttggatc |
11235087 |
T |
|
| Q |
238 |
aatgttcaatgactgagatcaaccattacgtgaaactgtgtaaaacagttacaacagggaatccaggtc |
306 |
Q |
| |
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|||||||||| |||||||| |||| | |||||||||| || || |||||||| || || ||||||||| |
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| T |
11235088 |
catgttcaatgtctgagatcgaccactgcgtgaaactgcgtgaagcagttacagcaagggatccaggtc |
11235156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 138 - 262
Target Start/End: Original strand, 11235183 - 11235307
Alignment:
| Q |
138 |
taacagcaggtgttgtaatgcatgtgagccatccaatcaaattttagcgactgagatcaaagtgtgttaaaactgactgaacaatctaaaccgttggatc |
237 |
Q |
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|||||||||||| ||||| |||||||||||||| | ||||||| || | ||||||| | ||||||| ||||||||||||||| ||||||| |||||||| |
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| T |
11235183 |
taacagcaggtgctgtaagacatgtgagccatccgaccaaatttcagtggctgagattatagtgtgtgaaaactgactgaacattctaaactgttggatc |
11235282 |
T |
|
| Q |
238 |
aatgttcaatgactgagatcaacca |
262 |
Q |
| |
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||||||||||||||||||| |||| |
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| T |
11235283 |
catgttcaatgactgagatcgacca |
11235307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 127 - 271
Target Start/End: Original strand, 11234793 - 11234936
Alignment:
| Q |
127 |
attttctactataacagcaggtgttgtaatgcatgtgagccatccaatcaaattttagcgactgagatcaaagtgtgttaaaactgactgaacaatctaa |
226 |
Q |
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||||||| || ||||||||||||| ||| |||||||| ||||| ||||||||| || | ||||||| ||||||||| ||||||||| |||||||||| |
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| T |
11234793 |
attttctgctgtaacagcaggtgt-gtatgacatgtgagtcatccgatcaaatttcagtggctgagattaaagtgtgtgaaaactgacataacaatctaa |
11234891 |
T |
|
| Q |
227 |
accgttggatcaatgttcaatgactgagatcaaccattacgtgaa |
271 |
Q |
| |
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|| |||||||| ||||||| || |||||||| |||| | |||||| |
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| T |
11234892 |
actgttggatccatgttcattggctgagatcgaccactgcgtgaa |
11234936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 306
Target Start/End: Original strand, 11234712 - 11234776
Alignment:
| Q |
242 |
ttcaatgactgagatcaaccattacgtgaaactgtgtaaaacagttacaacagggaatccaggtc |
306 |
Q |
| |
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||||||| |||||||| |||| ||||||||||| | ||||||||||||||||| || |||||| |
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| T |
11234712 |
ttcaatggctgagatcgaccactacgtgaaactacatgaaacagttacaacaggggattcaggtc |
11234776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 226 - 294
Target Start/End: Original strand, 37753094 - 37753162
Alignment:
| Q |
226 |
aaccgttggatcaatgttcaatgactgagatcaaccattacgtgaaactgtgtaaaacagttacaacag |
294 |
Q |
| |
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||||||||||||| ||||| ||| |||||||| |||| ||||||||||||||| || |||||||||||| |
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| T |
37753094 |
aaccgttggatcattgttctatggctgagatcgaccactacgtgaaactgtgtgaagcagttacaacag |
37753162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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